View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9568_low_19 (Length: 299)
Name: NF9568_low_19
Description: NF9568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9568_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 288
Target Start/End: Original strand, 49904843 - 49905112
Alignment:
| Q |
19 |
tatacagaaaaggcttagtccaagggcatcaattgtcaagtatcttctatccaaaggtttgatgaaagagggtgctagcttatgtacaccattttatctg |
118 |
Q |
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| T |
49904843 |
tatacagaaaaggcttagtccaagggcatcaattgtcaagtatcttctatccaaaggtttgatgaaagagggtgctagcttatgtacaccattttatctg |
49904942 |
T |
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| Q |
119 |
actgatgagaattttcagcgaaggtacgtgaggagaatcatctaagctagtaaacctaaatcagggagaatgctaatatcaccgttacaaccagccatat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49904943 |
actgatgagaattttcagcgaaggtacgtgaggagaatcatctaagctagtaaacctaaatcagggagaatgctaatatcaccgttacaaccagccatat |
49905042 |
T |
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| Q |
219 |
tatcttcatgccattctagttgcattcttctgacatgtaggtcgtagttctaattttgcaaacagcctat |
288 |
Q |
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| T |
49905043 |
tatcttcatgccattctagttgcattcttctgacatgtaggtcgtagttctaattttgctaacagcctat |
49905112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 49558425 - 49558295
Alignment:
| Q |
19 |
tatacagaaaaggcttagtccaagggcatcaattgtcaagtatcttctatccaaaggtttgatgaaagagggtgctagcttatgtacaccattttatctg |
118 |
Q |
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|||| |||||||||||| ||||||||| ||| || ||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| || |
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| T |
49558425 |
tatagagaaaaggcttattccaagggcttcagttatcaagtatcttctatccaaaggtttgatgaagaagggttctagcttatgcacaccatttcatgca |
49558326 |
T |
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| Q |
119 |
actgatgagaattttcagcgaaggtacgtga |
149 |
Q |
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| T |
49558325 |
actgatgaggatttccagcgaaggtatgtga |
49558295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 49562587 - 49562479
Alignment:
| Q |
19 |
tatacagaaaaggcttagtccaagggcatcaattgtcaagtatcttctatccaaaggtttgatgaaagagggtgctagcttatgtacaccattttatctg |
118 |
Q |
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|||| |||||||||||||||||||||| ||| || || ||||||||| ||||||||||||||||| ||| |||||||||| | ||||||||||| || |
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| T |
49562587 |
tatagagaaaaggcttagtccaagggcttcagttatccggtatcttctttccaaaggtttgatgaagaaggatgctagcttaactgcaccattttatttg |
49562488 |
T |
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| Q |
119 |
actgatgag |
127 |
Q |
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||||||||| |
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| T |
49562487 |
actgatgag |
49562479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 49571430 - 49571339
Alignment:
| Q |
24 |
agaaaaggcttagtccaagggcatcaattgtcaagtatcttctatccaaaggtttgatgaaagagggtgctagcttatgtacaccattttat |
115 |
Q |
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|||||||||||||||||||||| || || || |||||||||| ||||||||||||||||| ||| |||||||||| | ||||||||||| |
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| T |
49571430 |
agaaaaggcttagtccaagggcttctgttatccagtatcttctttccaaaggtttgatgaagaaggatgctagcttaactgcaccattttat |
49571339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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