View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9568_low_21 (Length: 283)
Name: NF9568_low_21
Description: NF9568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9568_low_21 |
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| [»] scaffold0119 (2 HSPs) |
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Alignment Details
Target: scaffold0119 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 99 - 269
Target Start/End: Complemental strand, 25496 - 25326
Alignment:
| Q |
99 |
tttgtttagctgaatagtagatacattgagtgattgttaatggacagtcaacaagcagctccattgtggctgtggctctggggaagggtaggccataggc |
198 |
Q |
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| T |
25496 |
tttgtttagctgaatagtagatacattgagtgattgttaatggacagtcaacaagcagctccattgtggctgtggctctggggaagggtaggccataggc |
25397 |
T |
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| Q |
199 |
ccattgtaggttaccttatctcgccttgttatgaggctgactccactccaactcactcgatagcaactccc |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
25396 |
ccattgtaggttaccttatctcgccttgttatgaggctgactccactccaactcacacgatagcaactccc |
25326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 25551 - 25494
Alignment:
| Q |
18 |
atatcccccttccttcttttgagctgaggcttcgagagaaccaacattgtatgacttt |
75 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25551 |
atatcccccttccttcttttgagctgagacttcgagagaaccaacattgtatgacttt |
25494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 99 - 269
Target Start/End: Original strand, 1275595 - 1275765
Alignment:
| Q |
99 |
tttgtttagctgaatagtagatacattgagtgattgttaatggacagtcaacaagcagctccattgtggctgtggctctggggaagggtaggccataggc |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1275595 |
tttgtttagctgaatagtagatacattgagtgattgttaatggacagtcaacaagcagctccattgtggctgtggctctggggaagggtaggccataggc |
1275694 |
T |
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| Q |
199 |
ccattgtaggttaccttatctcgccttgttatgaggctgactccactccaactcactcgatagcaactccc |
269 |
Q |
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| T |
1275695 |
ccattgtaggttaccttatctcgccttgttatgaggctgactccactccaactcacacgatagcaactccc |
1275765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 1275540 - 1275597
Alignment:
| Q |
18 |
atatcccccttccttcttttgagctgaggcttcgagagaaccaacattgtatgacttt |
75 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1275540 |
atatcccccttccttcttttgagctgagacttcgagagaaccaacattgtatgacttt |
1275597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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