View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9568_low_25 (Length: 269)
Name: NF9568_low_25
Description: NF9568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9568_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 14801187 - 14800945
Alignment:
| Q |
19 |
actagacatcacattcattgaacaatccattttggtttcactttttcttggtttaattggtttcactttaccaaaactcggaagacacattctaaatgca |
118 |
Q |
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| T |
14801187 |
actagacatcacattcattgaacaatccatattggtttcactttttcttggtttaattggtttcactttaccaaaacctggaagacacattctaaatgca |
14801088 |
T |
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| Q |
119 |
caacatttgaatccatcgccatcctttggtccatctttgacaataatagcttcgcttttgctgcaactttgttgtttcgtgttaccattttcactcggcc |
218 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14801087 |
caacatttgaatccatcgccatcctttggtccatcattgacaataatagcttcgcttttgctgcaactttgttgtttcgtgttaccattttcactcggcc |
14800988 |
T |
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| Q |
219 |
tcagatcaaattcatcggagagcgcatgagtttttcctttgct |
261 |
Q |
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| T |
14800987 |
tcagatcaaattcatcggagagtgcatgagtttttcctttgct |
14800945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 14804925 - 14804805
Alignment:
| Q |
19 |
actagacatcacattcattgaacaatccattttggtttcactttttcttggtttaattggtttcactttaccaaaactcggaagacacattctaaatgca |
118 |
Q |
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|||||||||||||||||||||| |||||| ||||||||| ||||||| | |||||||||||| ||||||||||||| |||| |||||||| ||||| | |
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| T |
14804925 |
actagacatcacattcattgaataatccaccttggtttcaatttttctagttttaattggttttactttaccaaaacctggaaaacacattccaaatgaa |
14804826 |
T |
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| Q |
119 |
caacatttgaatccatcgcca |
139 |
Q |
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||||||||||||| |||| |
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| T |
14804825 |
tggcatttgaatccatggcca |
14804805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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