View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9568_low_35 (Length: 239)
Name: NF9568_low_35
Description: NF9568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9568_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 7602158 - 7601949
Alignment:
| Q |
14 |
ccccacacagccatcgtgggagagatgtctctgtctctgtctttgcggttccgccgtgtaaaacaaatctcaagacttctctactactcaggtaccatga |
113 |
Q |
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| T |
7602158 |
ccccacacagccatcgtaggagagatgtctctgtctctgtctttgcggttccgccgtgtaaaacaaatctcaagacttctctactactcaggtaccatga |
7602059 |
T |
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| Q |
114 |
atgtttcttttaatttagtcttatcaactaaattttaataatctatttattttttgtaggtgattgttttaagcaccaatgtgacaaaggcttaaactca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7602058 |
atgtttcttttaatttagtcttatcaactaaattttaataatctatttattttttgtaggtgattgttttaagcaccaatgtgacaaaggcttaaactca |
7601959 |
T |
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| Q |
214 |
cttccatttt |
223 |
Q |
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|||||||||| |
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| T |
7601958 |
cttccatttt |
7601949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 8960184 - 8960403
Alignment:
| Q |
14 |
ccccacacagccatcgtgggagagatgtctctgtctctgtctttgcggttccgccgtgtaaaacaaatctcaagacttctctactactcaggtaccatg- |
112 |
Q |
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| T |
8960184 |
ccccacacaaccatcgtgggagagatgtctctgtct------ttacggttccgccgtgtaaaacaaatctcaagatttctcgaatactcaggtaccatgt |
8960277 |
T |
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| Q |
113 |
---------------aatgtttcttttaatttagtcttatcaactaaattttaataatctatttattttttgtaggtgattgttttaagcaccaatgtga |
197 |
Q |
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| T |
8960278 |
tttcacaactttgagaatgtttcttttaatttagtcttatcaactaaattttaataatctatttattttttgtaggtgattgttttaagcaccaatgtga |
8960377 |
T |
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| Q |
198 |
caaaggcttaaactcacttccatttt |
223 |
Q |
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|||||||||||||||||||||||||| |
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| T |
8960378 |
caaaggcttaaactcacttccatttt |
8960403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 143
Target Start/End: Complemental strand, 8959745 - 8959714
Alignment:
| Q |
112 |
gaatgtttcttttaatttagtcttatcaacta |
143 |
Q |
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| T |
8959745 |
gaatgtttcttttaatttagtcttatcaacta |
8959714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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