View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9568_low_36 (Length: 237)

Name: NF9568_low_36
Description: NF9568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9568_low_36
NF9568_low_36
[»] chr6 (5 HSPs)
chr6 (1-237)||(11131981-11132217)
chr6 (1-237)||(11195710-11195946)
chr6 (1-166)||(11155334-11155499)
chr6 (1-237)||(11208364-11208600)
chr6 (1-237)||(11274926-11275162)


Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 11132217 - 11131981
Alignment:
Q  1 agaagtacaaagatgaagacaagatgtataagaagaaggtagaaacaagaaatgcattggagaagtgtgcatataacatgaggaatgtcataaacgataa 100  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11132217 agaagtacaaggatgaagacaagatgtataggaagaaggtagaaacaagaaatgcattggagaagtgtgcatataacatgaggaatgccataaacgataa 11132118  T
Q  101 ggagattatgatgaagctttcgttagaagacaaggaagtgatcgataacacaattgattcggtcttactgtggcttgacgacaatgtggttgtagaacaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11132117 ggagattatgatgaagctttcgttagaagacaaggaagtgatcgataacacaattgattcggtcttactgtggcttgacgacaatgtgattgtagaacaa 11132018  T
Q  201 catgattttgagtattatacgaacttactttcaagtg 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  11132017 catgattttgagtattatacgaacttactttcaagtg 11131981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 11195946 - 11195710
Alignment:
Q  1 agaagtacaaagatgaagacaagatgtataagaagaaggtagaaacaagaaatgcattggagaagtgtgcatataacatgaggaatgtcataaacgataa 100  Q
    |||||||||||||||||||||||| ||||| ||||||| ||||| | ||| ||| ||| ||||||| |||||| |||||||||||||  ||||| |||||    
T  11195946 agaagtacaaagatgaagacaagaggtatatgaagaagctagaagcgagagatgtattagagaagtatgcatacaacatgaggaatgcgataaatgataa 11195847  T
Q  101 ggagattatgatgaagctttcgttagaagacaaggaagtgatcgataacacaattgattcggtcttactgtggcttgacgacaatgtggttgtagaacaa 200  Q
    ||| ||||   ||| |||||||| | |||| ||||||  |||| ||||  ||||||||| ||||||  ||||||| || |  || |||||||  ||||||    
T  11195846 ggacattagtttgatgctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttggtcttcatgtggctcgatgttaacgtggttgcggaacaa 11195747  T
Q  201 catgattttgagtattatacgaacttactttcaagtg 237  Q
     |  | |||||||||||||||| | | ||||||||||    
T  11195746 gaacaatttgagtattatacgagcattctttcaagtg 11195710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 11155499 - 11155334
Alignment:
Q  1 agaagtacaaagatgaagacaagatgtataagaagaaggtagaaacaagaaatgcattggagaagtgtgcatataacatgaggaatgtcataaacgataa 100  Q
    |||||||||||||||||||||||| ||||| ||||||||||||| | |||  || | | |||| || |||||| |||||||||||||  ||||| |||||    
T  11155499 agaagtacaaagatgaagacaagaggtatatgaagaaggtagaagcgagagttgtactagagacgtatgcatacaacatgaggaatgctataaatgataa 11155400  T
Q  101 ggagattatgatgaagctttcgttagaagacaaggaagtgatcgataacacaattgattcggtctt 166  Q
    ||| ||||   ||| |||||||| | |||| ||||||  |||| ||||  || |||||| ||||||    
T  11155399 ggatattagtttgatgctttcgtcaaaagaaaaggaaaagatcaataatgcacttgatttggtctt 11155334  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 11208600 - 11208364
Alignment:
Q  1 agaagtacaaagatgaagacaagatgtataagaagaaggtagaaacaagaaatgcattggagaagtgtgcatataacatgaggaatgtcataaacgataa 100  Q
    |||| |||||||||||||||| || | ||| ||||||||| ||| | ||||||||| | |||||||  ||||| || |||||| ||  |||||| |||      
T  11208600 agaaatacaaagatgaagacatgaggcataggaagaaggttgaatcgagaaatgcactagagaagtacgcatacaatatgagggattccataaatgatcc 11208501  T
Q  101 ggagattatgatgaagctttcgttagaagacaaggaagtgatcgataacacaattgattcggtcttactgtggcttgacgacaatgtggttgtagaacaa 200  Q
     ||  |||    ||||||||||| | |||| ||||||  |||| ||||| || |||||| ||||||  ||||||||||||  |||  ||| |||||||||    
T  11208500 agaagttagctcgaagctttcgtcaaaagaaaaggaaaagatcaataacgcagttgatttggtcttcatgtggcttgacgctaataaggtagtagaacaa 11208401  T
Q  201 catgattttgagtattatacgaacttactttcaagtg 237  Q
    || |||||||||| ||||| || | | ||||||||||    
T  11208400 caagattttgagtgttataggagcattctttcaagtg 11208364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 11275162 - 11274926
Alignment:
Q  1 agaagtacaaagatgaagacaagatgtataagaagaaggtagaaacaagaaatgcattggagaagtgtgcatataacatgaggaatgtcataaacgataa 100  Q
    |||||||||||||||||||||  | | ||| ||| ||||| ||| | ||||||||| | |||||||  ||||| || |||||| || ||||||| |||      
T  11275162 agaagtacaaagatgaagacattaggcataggaaaaaggttgaagcgagaaatgcactagagaagtacgcatacaatatgagggatttcataaatgatcc 11275063  T
Q  101 ggagattatgatgaagctttcgttagaagacaaggaagtgatcgataacacaattgattcggtcttactgtggcttgacgacaatgtggttgtagaacaa 200  Q
     || |||||   ||||||||| ||| |||| ||||||   ||| ||||  ||| ||||| ||||||   |||||||||||  |||||||||| |||||||    
T  11275062 cgatattatctcgaagctttcattaaaagaaaaggaaaacatcaataatgcaactgatttggtctttaagtggcttgacgttaatgtggttgcagaacaa 11274963  T
Q  201 catgattttgagtattatacgaacttactttcaagtg 237  Q
    || |||||||| | ||||| || | | ||||||||||    
T  11274962 caagattttgaatgttataggagcattctttcaagtg 11274926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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