View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9568_low_37 (Length: 236)
Name: NF9568_low_37
Description: NF9568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9568_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 25 - 225
Target Start/End: Original strand, 7602227 - 7602427
Alignment:
| Q |
25 |
cccgacccgccccgactacaaatattagtcgaggtcgagacttgggatccggatcctctcctgcgaggttctctccagtttccgtcctgcgttaatccta |
124 |
Q |
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| T |
7602227 |
cccgacccgacccgactacaaatattagtcgaggtcgagacttgggatccggatcctctcctgcgaggttctctccagtttccgtcctgcgttaatccta |
7602326 |
T |
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| Q |
125 |
gcctttagattaaatctacagnnnnnnnnnnnnnnnnnnnnntgaaactgtttcaccgtcttccccaaaagttcccactgcacagtcaccgccacttctc |
224 |
Q |
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| T |
7602327 |
gcctttagattaaatctacagaaaaaaggcaaaaaaagaaaatgaaactgtttcaccgtcttccccaaaagttcccactgcacagtcaccgccacttctc |
7602426 |
T |
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| Q |
225 |
t |
225 |
Q |
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| |
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| T |
7602427 |
t |
7602427 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 8960136 - 8960086
Alignment:
| Q |
9 |
gaggtgggggtgggttcccgacccgccccgactacaaatattagtcgaggtcgaga |
64 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8960136 |
gaggtgagggtgggttcccgacccg-----actacaaatattagtcgaggtcgaga |
8960086 |
T |
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