View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9568_low_39 (Length: 229)
Name: NF9568_low_39
Description: NF9568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9568_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 8577489 - 8577679
Alignment:
| Q |
1 |
taatggtgaggttatgaaaggaatcatattatatggattgaagaaaaagatggtagctggaatgatctctccaaagctcttattgttctcaaatgtgtgc |
100 |
Q |
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| T |
8577489 |
taatggtgaggttatgaaaggaatcatattatatggattgaagaaaatgatggtagctggaatgatctctccaaaactcttattgttctcaaatgtgtgc |
8577588 |
T |
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| Q |
101 |
ttctcacttatttatactacaacttatctaggataagctccattgttaat----tgaggaaaa-tccaaattttgtatagtaggtggaatg |
186 |
Q |
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| T |
8577589 |
ttctcacttatttatactacaactcatctaggttaagctccattgttaattaaatgaggaaaattccaaattttgtatagtaggtggaatg |
8577679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 8597451 - 8597414
Alignment:
| Q |
78 |
tcttattgttctcaaatgtgtgcttctcacttatttat |
115 |
Q |
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| T |
8597451 |
tcttaatgttctcaaatgtgtgcttctcacttatttat |
8597414 |
T |
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