View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9568_low_4 (Length: 405)
Name: NF9568_low_4
Description: NF9568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9568_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 45700384 - 45700011
Alignment:
| Q |
18 |
aaactaaaactatatcacctggagaagatacatgatagcgcctaggtttgttacatttaaatttcaaggggcgccacttgccttggtcgattaagtcttg |
117 |
Q |
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| T |
45700384 |
aaactaaaactatatcacctggagaagatacatgatagcgactaggtttgttacatttaaatttcaaggagcgccacttgccttggtcgattaagtcttg |
45700285 |
T |
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| Q |
118 |
aattttatgactcaaactttccaagctaattaaacaca--gagataatgaggtatggaatctccttgttttacccctcttgaagatcgaaaatagttagt |
215 |
Q |
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| T |
45700284 |
aattttatgactctaactttccaagctaattaaacacaaagagataacgaggtatggaatctccttgttttacccctcttgaagatcgaaaatagttagt |
45700185 |
T |
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| Q |
216 |
tttagaacaattaaattgatgttcattgaggtagaggaaatacaactcaatattacattctcttattaataggcaagtgcaattgttttaatggctccat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
45700184 |
tttagaacaattaaattgatgttcattgaggtagaggaaatacaactcaatattacattctcttattaataggcaagtgcaattgttctaatggctccat |
45700085 |
T |
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| Q |
316 |
gataaacttccattcgaacctatcatatgttttctgaataatataattgaatatcttcctcaacatgtcacctt |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45700084 |
gataaacttccattcgaacctatcatatgttttctgaataatataattgaatatcttcctcaacatgtcacctt |
45700011 |
T |
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