View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9568_low_43 (Length: 226)
Name: NF9568_low_43
Description: NF9568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9568_low_43 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 57 - 226
Target Start/End: Original strand, 7821715 - 7821889
Alignment:
| Q |
57 |
ttacagttcaaaattgccaattccgcaatattagcacataaaaacacttccaaggtttttaaggtattgaatgtaaca-----gagaaaagatggacatc |
151 |
Q |
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| T |
7821715 |
ttacagttcaaaattgccaattctgcaatattagcacacaaaaacacttccaaggtattgaatgtaacaaagatgacaagtcagagaaaagatggacatc |
7821814 |
T |
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| Q |
152 |
tatctaaatattatttgggtcctaatgcaactacaaatcgccaagattgaagccactggtgtcttcctggtgtac |
226 |
Q |
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| T |
7821815 |
tatgtaaatattatttgggtcctaatgcaacttcaaatcgccaagattgaagccactggtgtcttcctggtgtac |
7821889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 133 - 226
Target Start/End: Original strand, 7812265 - 7812358
Alignment:
| Q |
133 |
cagagaaaagatggacatctatctaaatattatttgggtcctaatgcaactacaaatcgccaagattgaagccactggtgtcttcctggtgtac |
226 |
Q |
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| T |
7812265 |
cagagaaaagatggacattcatctaaatattatttgggccctaatgaaaatccacatcgtcaagattgtagccattggtgtcttcccggtgtac |
7812358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 7821681 - 7821714
Alignment:
| Q |
3 |
catttggaaacaatgccagaacaggggtccgcat |
36 |
Q |
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| T |
7821681 |
catttggaaacaatgccagaacaggggtccgcat |
7821714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 7812151 - 7812218
Alignment:
| Q |
39 |
gtacctaaggatagttggttacagttcaaaattgccaattccgcaatattagcacataaaaacacttc |
106 |
Q |
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| T |
7812151 |
gtacctaaagataactggtcacagttcaaaattgccaattctgcaatattaaaacacacaaacacttc |
7812218 |
T |
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