View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9568_low_46 (Length: 219)
Name: NF9568_low_46
Description: NF9568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9568_low_46 |
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Alignment Details
Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 17124571 - 17124664
Alignment:
| Q |
113 |
cagtattactttgaagatagatttgacttggttaagttcatcaaagtggttcaacaagctggactttatgttcatttgcgtattggtccctatg |
206 |
Q |
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| T |
17124571 |
cagtattactttgaagatagatttgacttggttaagttcatcaaagtggttcaacaagctggactttatgttcatttgcgtattggtccctatg |
17124664 |
T |
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Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 113 - 204
Target Start/End: Original strand, 5229724 - 5229815
Alignment:
| Q |
113 |
cagtattactttgaagatagatttgacttggttaagttcatcaaagtggttcaacaagctggactttatgttcatttgcgtattggtcccta |
204 |
Q |
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| T |
5229724 |
cagtattacttcgaagatagatttgacttggtaaagtttgtcaagctagcacaacaagctggtctttatgttcacttgcgtattggtcccta |
5229815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 114 - 204
Target Start/End: Complemental strand, 52550633 - 52550543
Alignment:
| Q |
114 |
agtattactttgaagatagatttgacttggttaagttcatcaaagtggttcaacaagctggactttatgttcatttgcgtattggtcccta |
204 |
Q |
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||||||| ||||||||||| | || ||||||||||||||||| ||||| ||||||||||| |||||||||||| | || ||||||||||| |
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| T |
52550633 |
agtattattttgaagataggtacgatttggttaagttcatcaaggtggtgcaacaagctgggctttatgttcatcttcgcattggtcccta |
52550543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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