View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9568_low_7 (Length: 375)
Name: NF9568_low_7
Description: NF9568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9568_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 360
Target Start/End: Complemental strand, 25346869 - 25346527
Alignment:
| Q |
18 |
gtgggccatcatatatctacaaaagacaatgaagacatagaaagtagaactctgtcgttgtctatgttgactnnnnnnnnnnnnnnnnnnnnngagaata |
117 |
Q |
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| T |
25346869 |
gtgggccatcatatatctacaaaagacaatgaagacatagaaagtagaactctgtcgttgtctatgttgactaaaacaaaaacaaaaacaaaagagaata |
25346770 |
T |
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| Q |
118 |
aagtctcatctgtgtctgtaatatcattttgattgcttgtttgttgtattgcatttatctccgtatatgggtttagatcaatatttcatattctcatatc |
217 |
Q |
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||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25346769 |
aagtctcatctatgtctgtaatatcattttgagtgcttgtttgttgtattgcatttatctccgtatatgggtttagatcaatatttcatattctcatatc |
25346670 |
T |
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| Q |
218 |
ctaatctgtttttaaaaggtatgatgcttttccactctaaatttacattactttttaatttgttgcagtccacattaatgcaaagttggtttggctgcaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25346669 |
ctaatctgtttttaaaaggtatgatgcttttccactctaaatttacattactttttaatttgttgcagtccacattaatgcaaagttggtttggctgcaa |
25346570 |
T |
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| Q |
318 |
tttttgaaaatcagtatgtcacttagtgcatggggaagttttt |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25346569 |
tttttgaaaatcagtatgtcacttagtgcatggggaagttttt |
25346527 |
T |
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