View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9568_low_8 (Length: 373)

Name: NF9568_low_8
Description: NF9568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9568_low_8
NF9568_low_8
[»] chr8 (6 HSPs)
chr8 (1-144)||(1357263-1357406)
chr8 (177-271)||(1352319-1352413)
chr8 (177-271)||(2041244-2041338)
chr8 (270-355)||(1358105-1358190)
chr8 (181-271)||(1357444-1357534)
chr8 (235-271)||(1364328-1364364)
[»] chr5 (1 HSPs)
chr5 (177-271)||(36717352-36717446)
[»] chr3 (1 HSPs)
chr3 (187-271)||(24620546-24620630)
[»] chr6 (1 HSPs)
chr6 (6-91)||(15434983-15435066)


Alignment Details
Target: chr8 (Bit Score: 144; Significance: 1e-75; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 1357263 - 1357406
Alignment:
Q  1 tcagagggagaaatagagacttcaatccatattattttcatgccttcccataattcatcctttctccttttatatccatttctgttagcaatttatcctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1357263 tcagagggagaaatagagacttcaatccatattattttcatgccttcccataattcatcctttctccttttatatccatttctgttagcaatttatcctt 1357362  T
Q  101 aattattggatcaagtgacacgtgtctctttacactaactagat 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  1357363 aattattggatcaagtgacacgtgtctctttacactaactagat 1357406  T

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Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 177 - 271
Target Start/End: Original strand, 1352319 - 1352413
Alignment:
Q  177 gaatcctgttatgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgtta 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1352319 gaatcctgttatgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgtta 1352413  T

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Target: chr8; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 177 - 271
Target Start/End: Complemental strand, 2041338 - 2041244
Alignment:
Q  177 gaatcctgttatgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgtta 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2041338 gaatcctgttatgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaaggtattgataatgtaaaataccttggagatgtta 2041244  T

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Target: chr8; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 270 - 355
Target Start/End: Original strand, 1358105 - 1358190
Alignment:
Q  270 tatattgttaacatggtatcatagcttggttcaatcctccggctttacatacaatcttcatagtgcttctcagcaaaagcacgccc 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1358105 tatattgttaacatggtatcatagcttggttcaatcctccggctttacatacaatcttcatagtgcttctcagcaaaagcacgccc 1358190  T

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Target: chr8; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 181 - 271
Target Start/End: Original strand, 1357444 - 1357534
Alignment:
Q  181 cctgttatgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgtta 271  Q
    |||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1357444 cctgttatgatgaagagaaaggatcaaacatgtttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgtta 1357534  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 1364328 - 1364364
Alignment:
Q  235 aaagctattgataatgtaaaataccttggagatgtta 271  Q
    |||||||||||||||||||||||||||||||||||||    
T  1364328 aaagctattgataatgtaaaataccttggagatgtta 1364364  T

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Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 177 - 271
Target Start/End: Original strand, 36717352 - 36717446
Alignment:
Q  177 gaatcctgttatgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgtta 271  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36717352 gaatcctgttatgatgaagagaaaggatcaaacatctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgtta 36717446  T

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Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 187 - 271
Target Start/End: Complemental strand, 24620630 - 24620546
Alignment:
Q  187 atgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgtta 271  Q
    |||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24620630 atgatgaagagaaaggatcaaacatatttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgtta 24620546  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 15434983 - 15435066
Alignment:
Q  6 gggagaaatagagacttcaatccatattattttcatgc-cttcccataattcatcctttctccttttatatccatttctgttagcaa 91  Q
    |||||||||||||||||||||||  ||||||||||||| | || ||| |||||  |||||||| ||||||||||||||| |||||||    
T  15434983 gggagaaatagagacttcaatcc--attattttcatgctcctcacatcattcagactttctcc-tttatatccatttctcttagcaa 15435066  T

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