View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9569_low_3 (Length: 575)
Name: NF9569_low_3
Description: NF9569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9569_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 174 - 477
Target Start/End: Original strand, 36206493 - 36206800
Alignment:
| Q |
174 |
ttctttgacaagagaaacgcacagatttggcagcttgtccacttccggtggcaacatcccaagcgaggttgtgagagggagttttagaagctatgaattg |
273 |
Q |
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| T |
36206493 |
ttctttgacaagagaaacgcacagatttgggagcttgtccacttccggtggcaacgtcccaaacgaggttgtgagagggagttttagaagctatgaattg |
36206592 |
T |
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| Q |
274 |
gaagagttgtgccggataacttggccttgcatttgaatattcctttgcctgattcacataaagttctgccatctctattctcttcttaattcgctataac |
373 |
Q |
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| T |
36206593 |
gaagagttgtggtggataacttggccttgcatttgaatattcccttgcctgattcacataaagttctgccatctctattctcttcttaattcgctataac |
36206692 |
T |
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| Q |
374 |
ttatttcctaataatttttagatcagacttgaatttgcatctttcattgcccattgcatttgcac----tatatatagtaattcattacaattgaacctt |
469 |
Q |
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| T |
36206693 |
taatttcctaataatttttagatcagactcaaatttgcatctttgattgcccattgcatttgcactatatatatatagtaattcatgacgatcggacctt |
36206792 |
T |
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| Q |
470 |
agtttgaa |
477 |
Q |
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|||||||| |
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| T |
36206793 |
agtttgaa |
36206800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 194 - 351
Target Start/End: Complemental strand, 35401853 - 35401696
Alignment:
| Q |
194 |
acagatttggcagcttgtccacttccggtggcaacatcccaagcgaggttgtgagagggagttttagaagctatgaattggaagagttgtgccggataac |
293 |
Q |
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| T |
35401853 |
acagatttggcggcttggccacttccagtagcaacatcccaaacaaggttgtgagagggagttttagaagctatgaattgaaagagttgtggtggataac |
35401754 |
T |
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| Q |
294 |
ttggccttgcatttgaatattcctttgcctgattcacataaagttctgccatctctat |
351 |
Q |
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| T |
35401753 |
ttggccttgcatctgcgtattcctttccctgattcacaaaaagctctgccatctctat |
35401696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 194 - 345
Target Start/End: Complemental strand, 35399125 - 35398974
Alignment:
| Q |
194 |
acagatttggcagcttgtccacttccggtggcaacatcccaagcgaggttgtgagagggagttttagaagctatgaattggaagagttgtgccggataac |
293 |
Q |
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||||||||||| ||||| |||||||| || |||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
35399125 |
acagatttggcggcttggccacttccagtagcaacatcccaaacaaggttgtgagagggagttttagaagctatgaattgaaagagttgtggtggataac |
35399026 |
T |
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| Q |
294 |
ttggccttgcatttgaatattcctttgcctgattcacataaagttctgccat |
345 |
Q |
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| T |
35399025 |
ttggccttgcatctgcgtattcctttccctgattcacaaaaagctctgccat |
35398974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 190 - 364
Target Start/End: Original strand, 36210276 - 36210450
Alignment:
| Q |
190 |
acgcacagatttggcagcttgtccacttccggtggcaacatcccaagcgaggttgtgagagggagttttagaagctatgaattggaagagttgtgccgga |
289 |
Q |
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||||||||||||||||||||| || |||| ||||| || |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
36210276 |
acgcacagatttggcagcttggccggttcctgtggccacgtcccaagcaaggtcgtgagagggagttttagaagctatgaattggaagagttgtggtgga |
36210375 |
T |
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| Q |
290 |
taacttggccttgcatttgaatattcctttgcctgattcacataaagttctgccatctctattctcttcttaatt |
364 |
Q |
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||||||||||||| || || |||||||||| |||| ||| || || | |||||||| |||||||||| ||||||| |
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| T |
36210376 |
taacttggccttgaatctgcatattcctttccctgtttcgcaaaatgctctgccatttctattctctccttaatt |
36210450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 36206333 - 36206400
Alignment:
| Q |
16 |
agaacaaaagttatatagtacgaaatcacaa------atatgcttttgatatctgcaaatatgtataa |
77 |
Q |
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|||||||||||| |||||||||||||||||| |||||||||| || ||||||||||||||||| |
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| T |
36206333 |
agaacaaaagttgtatagtacgaaatcacaaatatatatatgcttttaatgtctgcaaatatgtataa |
36206400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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