View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9569_low_6 (Length: 397)
Name: NF9569_low_6
Description: NF9569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9569_low_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 9 - 397
Target Start/End: Original strand, 35127803 - 35128191
Alignment:
| Q |
9 |
gaagcagagagagacaatgaaatggttgatgttagcgaggaaagtgtcatattggataatgattatgggcaaagggctgtgaacgaggagttcgagccgg |
108 |
Q |
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| T |
35127803 |
gaagcaaagagagacaatgaaatggttgatgttagtgaggaaagtgtgatattggataatgattatgggcaaagggctgtgaacgaggagttcgagccgg |
35127902 |
T |
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| Q |
109 |
aattatcacattcaagtgatgccaacgatgtcatccagtacaatggttctgagaaagacagcactgattatttctctgaggaggaaccttcaccacataa |
208 |
Q |
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| T |
35127903 |
aattatcacattcaagtgatgccaacgatgtcatccagtacaatggttctgagaaagacagcactgattatttctctgaggaggaaccttcaccacataa |
35128002 |
T |
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| Q |
209 |
gcttgatgatgagaagccgatgagtggaggtacaattatggaagggtttgatgaaagtgaagaatttaaagaacccttcgagtttggtgtcacaaatgtt |
308 |
Q |
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| T |
35128003 |
gcttgatgatgagaagccgatgagtggaggtacaattatggaagggtttgatgaaagtgaagaatttaaagaacccttcgagtttggtgtcacaaatgtt |
35128102 |
T |
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| Q |
309 |
gttttagaggaatgtgaggatgaggtcgaagagggtgatatagaggaggaagcaatgcataaagaaacaaaagggctattagaaaaaat |
397 |
Q |
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| T |
35128103 |
gttttagaggaatgtggagatgaggtggaagagggtgatatagaggaggaagcaatgcataaagaaacaaaagggctattagaaaaaat |
35128191 |
T |
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