View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9569_low_7 (Length: 386)
Name: NF9569_low_7
Description: NF9569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9569_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 19 - 381
Target Start/End: Complemental strand, 35128527 - 35128165
Alignment:
| Q |
19 |
cttccatcaatcagttcagaagtttcagtgaccggctgctgtgaatcatttgagccatcaacttctaactctaaattacctcttgcagattcacctaatt |
118 |
Q |
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| T |
35128527 |
cttccatcaatcagttcagaagtttcagtgaccggctgctgtgaatcatttgagccatcaacctctaactctaaattacctcttgcagattcacctaatt |
35128428 |
T |
|
| Q |
119 |
ctacctcattgcaaacattacccttatcatcatcatttcttgattgaactgtatccttgcatacttttgaatcttcttgactcctcatttctccttcagt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35128427 |
ctacctcattgcaaacattacccttatcatcatcatttcttgattgaactgtatcctcgcatacttttgaatcttcttgactcctcatttctccttcagt |
35128328 |
T |
|
| Q |
219 |
ccacaaatcatgtttgtcttcctgttctgcttccacattttcaacaactgaaccaatatcttgatggctttcacttgttccactggaaactccttttgca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35128327 |
ccacaaatcatgtttgtcttcctgttctgcttccacattttcaacaactgaaccaatatcttgatggctttcacttgttccactggaaactccttttgca |
35128228 |
T |
|
| Q |
319 |
tattctcctctcatatcatttctaccctcatctctaattttttctaatagcccctttgcttct |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
35128227 |
tattctcctctcatatcatttctaccctcatctctaattttttctaatagcccttttgtttct |
35128165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 35128881 - 35128636
Alignment:
| Q |
19 |
cttccatcaatcagttcagaagtttcagtgaccggctgctgtgaatcatttgagccatcaacttctaactctaaattacctcttgcagattcacctaatt |
118 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||| |||||||||||||||||||||| || ||| ||| ||| |
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| T |
35128881 |
cttccatcaatcagttcagaagtttcagagaccggcttctgtgaatcatttgaaccatcaacctctaactctaaattacctcttgaaggttcgcctgatt |
35128782 |
T |
|
| Q |
119 |
ctacctcattgcaaacattacccttat---catcatcatttcttgattgaactgtatccttgcatacttttgaatcttcttgactcctcatttctccttc |
215 |
Q |
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||||||||||| | ||| | ||||||| |||||||||||||||||||| |||| |||| |||||||||||||||||||||| | |||||||||||||| |
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| T |
35128781 |
ctacctcattgaatacacttcccttattatcatcatcatttcttgattgagctgtctcctcgcatacttttgaatcttcttgatttctcatttctccttc |
35128682 |
T |
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| Q |
216 |
agtccacaaatcatgtttgtcttcctgttctgcttccacattttca |
261 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35128681 |
agtccacaaatcatgtttgtcttcctgtcctgcttccacattttca |
35128636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 163 - 361
Target Start/End: Original strand, 26778813 - 26779017
Alignment:
| Q |
163 |
tgaactgtatccttgcatacttttgaatcttcttgactcctcatttctccttcagtccacaaatcatgtttgtcttcctgttctgcttccacattttcaa |
262 |
Q |
| |
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||||| || |||| ||||||| |||||||| |||| ||||||||||||| ||| ||| |||| | ||||||||||| || || ||| || |||||||| |
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| T |
26778813 |
tgaaccgtctcctagcatactcttgaatctgtttgattcctcatttctccatcaatccccaaacccagtttgtcttccagtgctacttgcatattttcaa |
26778912 |
T |
|
| Q |
263 |
caactgaaccaatatcttgatggct-ttcact-----tgttccactggaaactccttttgcatattctcctctcatatcatttctaccctcatctctaat |
356 |
Q |
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|||||| ||||||||| |||| | ||||| ||||||||| | || |||||||||| |||||||||||||||| | |||||||||||||| || |
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| T |
26778913 |
caactggaccaatatcatgattcatgatcactctcactgttccactaggaatcccttttgcatcttctcctctcatatcagtcctaccctcatctctgat |
26779012 |
T |
|
| Q |
357 |
ttttt |
361 |
Q |
| |
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||||| |
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|
| T |
26779013 |
ttttt |
26779017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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