View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9569_low_8 (Length: 348)
Name: NF9569_low_8
Description: NF9569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9569_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 14 - 333
Target Start/End: Complemental strand, 19440882 - 19440564
Alignment:
| Q |
14 |
agaaacaaattcgcaagtcttaactaaatcaccaggatacctgattgtaaagatggtaaaacattccaatccagaaaagatcagacagaaactttgtcag |
113 |
Q |
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| T |
19440882 |
agaaacaaattcgcaagtcttaactaaatcaccaggatacctgattgtaaagatggtaaaacattccaatccagaaaagatcagacagaaactttgtcag |
19440783 |
T |
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| Q |
114 |
tccaacttttgaaatagcatttctaaatccaaattccatcagttgcggtccttcaatctaagaagcatccaaaaccaaatcagtcgcaaactgaagaaaa |
213 |
Q |
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| T |
19440782 |
tccaacttttgaaatagcatttctaaatccaaattccatcagttggggtccttcaatctaagaagcatccaaaaccaaatcagtcacaaactgaagaaaa |
19440683 |
T |
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| Q |
214 |
atcaatagtaaaattaccaagtttagtctctattttgcttttatagtgactaaatctagggacttaaagatctcatctgttaataaggactaaaaatatt |
313 |
Q |
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| T |
19440682 |
atcaatagtaaaatta-caagtttagtctctattttgcttttatagtgactaaatctagggacttaaagatctcatttgttaataaggactaaaaacatt |
19440584 |
T |
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| Q |
314 |
taaccctaaaattaaccttt |
333 |
Q |
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| T |
19440583 |
taaccctaaaattaaccttt |
19440564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 31661912 - 31661871
Alignment:
| Q |
39 |
aaatcaccaggatacctgattgtaaagatggtaaaacattcc |
80 |
Q |
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| T |
31661912 |
aaatcaccaggatacctgattgtaaagatagtaaaacattcc |
31661871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 34965607 - 34965563
Alignment:
| Q |
51 |
tacctgattgtaaagatggtaaaacattccaatccagaaaagatc |
95 |
Q |
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| T |
34965607 |
tacctggttgtaaagatggtaaaacataccaacccagaagagatc |
34965563 |
T |
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