View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9570_high_7 (Length: 239)
Name: NF9570_high_7
Description: NF9570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9570_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 47323765 - 47323987
Alignment:
| Q |
1 |
gttataataacattggaagnnnnnnnnttgttgagttaccaaaagttgtgaaaacactttgtaacctctcaagatcttgtgatgattggcaataccttgg |
100 |
Q |
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| T |
47323765 |
gttataataacattggaagaaaaaaaattgttgagttaccaaaagttgtgaaaacactttgtaacctctcaagatcttgtgatgattggcaataccttgg |
47323864 |
T |
|
| Q |
101 |
tatagattgtcttttattgcttctcaaggatgaaaatacaaggtacaaagttattattgatgatattgatgttgtttcatgtcttgttgatttgattgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
47323865 |
tatagattgtcttttattgcttctcaaggatgaaaatacaaggtacaaagttattattgatgatgttgatgttgtttcatgtcttgttgatttgattgaa |
47323964 |
T |
|
| Q |
201 |
cttagaaaacttggtgataaatc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
47323965 |
cttagaaaacttggtgataaatc |
47323987 |
T |
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