View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9570_low_1 (Length: 423)

Name: NF9570_low_1
Description: NF9570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9570_low_1
NF9570_low_1
[»] chr6 (11 HSPs)
chr6 (19-409)||(11155454-11155844)
chr6 (19-421)||(11195901-11196303)
chr6 (21-371)||(11132174-11132524)
chr6 (269-409)||(11160566-11160706)
chr6 (269-409)||(11199147-11199287)
chr6 (25-130)||(11208561-11208666)
chr6 (19-130)||(11275117-11275228)
chr6 (19-115)||(11165506-11165602)
chr6 (19-130)||(11169733-11169844)
chr6 (47-121)||(11315600-11315674)
chr6 (258-311)||(11169972-11170025)
[»] chr8 (1 HSPs)
chr8 (259-312)||(12527925-12527978)


Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 19 - 409
Target Start/End: Original strand, 11155454 - 11155844
Alignment:
Q  19 gcttctaccttcttcatatacctcttgtcttcatctttgtacttctcagcttctttgatcttcctcttaatatcctcctttgacaaccttcccttgtcac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11155454 gcttctaccttcttcatatacctcttgtcttcatctttgtacttctcagcttctttgatcttcctctcaatatcctcctttgacaaccttcccttgtcac 11155553  T
Q  119 ttattattttaaccttcttattaactccaagggacttttccgtgctacaaacgtctaagatgccatcatcatcgatttggaagctgattttaatctgagg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11155554 ttattattttaaccttcttattaactccaagggacttttccgtgctacaaacgtctaagatgccatcatcatcgatttggaagctgattttaatctgagg 11155653  T
Q  219 accacctgccggagccggaggaatttccaaaacaaattttccaagcaagttgttttccctagctattttcctctcaccttcataaacatgaattaaaata 318  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  11155654 aacacctgccggagccggaggaatttccaaaacaaattttccaagcaagttgttttccctagttattttcctctcaccttcataaacatgaattagaata 11155753  T
Q  319 ttgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtaggaatgtgggtattccttgggattattatgtccataatccccc 409  Q
    || ||||||||||  | ||||||||||||||||| |||||| | || |||||| | ||||||||| ||||||||| ||| |||||||||||    
T  11155754 ttcatttggttgtgcaaatgtgtggtgaatacatgttccattttggcaggaattttggtattcctagggattattgtgttcataatccccc 11155844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 421
Target Start/End: Original strand, 11195901 - 11196303
Alignment:
Q  19 gcttctaccttcttcatatacctcttgtcttcatctttgtacttctcagcttctttgatcttcctcttaatatcctcctttgacaaccttcccttgtcac 118  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||| |||||||| ||||    
T  11195901 gcttctagcttcttcatatacctcttgtcttcatctttgtacttctcagcttctttgatcatcctctcaatttcctcctttgacaatcttcccttatcac 11196000  T
Q  119 ttattattttaaccttcttattaactccaagggacttttccgtgctacaaacgtctaagatgccatcatcatcgatttggaagctgattttaatctgagg 218  Q
    |||||||||||||||| ||||||||||||||| | || ||| ||||||| | || |||||||||||| |||||||||||||||| |||| | ||||||||    
T  11196001 ttattattttaaccttattattaactccaaggaatttctccctgctacagatgtgtaagatgccatcgtcatcgatttggaagcggattatgatctgagg 11196100  T
Q  219 accacctgccggagccggaggaatttccaaaacaaattttccaagcaagttgttttccctagctattttcctctcaccttcataaacatgaattaaaata 318  Q
    | ||||||||| ||| |||||||||||||| |||||| |||| ||||||||||| ||||||| |||||||||||||||||||||||||| ||||| ||||    
T  11196101 aacacctgccgcagcaggaggaatttccaacacaaatcttcctagcaagttgttgtccctagttattttcctctcaccttcataaacatcaattagaata 11196200  T
Q  319 ttgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtaggaatgtgggtattccttgggattattatgtccataatccccctatgcttct 418  Q
    || ||||||||||  | ||||||||||||||||| |||||| | || |||||| | ||||||||| ||||||||||| ||||||||||||| ||| ||||    
T  11196201 ttcatttggttgtgcaaatgtgtggtgaatacatgttccattttggcaggaattttggtattcctagggattattatttccataatccccccatgtttct 11196300  T
Q  419 cca 421  Q
    |||    
T  11196301 cca 11196303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 21 - 371
Target Start/End: Original strand, 11132174 - 11132524
Alignment:
Q  21 ttctaccttcttcatatacctcttgtcttcatctttgtacttctcagcttctttgatcttcctcttaatatcctcctttgacaaccttcccttgtcactt 120  Q
    ||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| |||| |||||| ||| || || ||||||| ||||||||||||| ||    
T  11132174 ttctaccttcttcctatacatcttgtcttcatccttgtacttctcagcttcttcgatcatcctctcaatctcttcttttgacagccttcccttgtcattt 11132273  T
Q  121 attattttaaccttcttattaactccaagggacttttccgtgctacaaacgtctaagatgccatcatcatcgatttggaagctgattttaatctgaggac 220  Q
     ||||| | || ||||| || ||||| ||  | ||||| |||  | | || |  |||||||| |||| ||| |||||||| ||||   | || |||||      
T  11132274 cttattgtcacattcttttttactccgagaaatttttcggtggcagagacatgcaagatgccgtcattatcaatttggaaactgaccatgatttgaggta 11132373  T
Q  221 cacctgccggagccggaggaatttccaaaacaaattttccaagcaagttgttttccctagctattttcctctcaccttcataaacatgaattaaaatatt 320  Q
     |||||||||||| || ||||||||||||||||||||||| |||||||||||  || ||| |||||| || ||||| || ||||||||||| ||||||||    
T  11132374 tacctgccggagctgggggaatttccaaaacaaattttcctagcaagttgttccccatagttatttttctttcaccctcgtaaacatgaatcaaaatatt 11132473  T
Q  321 gatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtaggaat 371  Q
    | ||||||| | || |||||| |||||||| | |||||||  |||||||||    
T  11132474 ggtttggttatgaagatgtgttgtgaatacttgttccatgctggtaggaat 11132524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 269 - 409
Target Start/End: Original strand, 11160566 - 11160706
Alignment:
Q  269 tgttttccctagctattttcctctcaccttcataaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtagg 368  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||  | ||||||||||||||||| |||||| | || |||    
T  11160566 tgttttccctagttattttcctctcaccttcataaacatgaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattttggcagg 11160665  T
Q  369 aatgtgggtattccttgggattattatgtccataatccccc 409  Q
    ||| | ||||||||| ||||||||| ||| |||||||||||    
T  11160666 aattttggtattcctagggattattgtgttcataatccccc 11160706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 269 - 409
Target Start/End: Original strand, 11199147 - 11199287
Alignment:
Q  269 tgttttccctagctattttcctctcaccttcataaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtagg 368  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||| || |||||||  | ||||||||||||||||| |||||| | || |||    
T  11199147 tgttttccctagttattttcctctcaccttcataaacatgaattagaatattcatgtggttgtgcaaatgtgtggtgaatacatgttccattttggcagg 11199246  T
Q  369 aatgtgggtattccttgggattattatgtccataatccccc 409  Q
    ||| | ||||||||| ||||||||| ||| |||||||||||    
T  11199247 aattttggtattcctagggattattgtgttcataatccccc 11199287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 11208561 - 11208666
Alignment:
Q  25 accttcttcatatacctcttgtcttcatctttgtacttctcagcttctttgatcttcctcttaatatcctcctttgacaaccttcccttgtcacttatta 124  Q
    ||||||||| ||| |||| |||||||||||||||| |||||||||||  ||||| |||||| ||| |||||||||||||  |||||||||||| ||| ||    
T  11208561 accttcttcctatgcctcatgtcttcatctttgtatttctcagcttcactgatcatcctctcaatttcctcctttgacagtcttcccttgtcatttacta 11208660  T
Q  125 ttttaa 130  Q
    ||||||    
T  11208661 ttttaa 11208666  T

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Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 11275117 - 11275228
Alignment:
Q  19 gcttctaccttcttcatatacctcttgtcttcatctttgtacttctcagcttctttgatcttcctcttaatatcctcctttgacaaccttcccttgtcac 118  Q
    ||||| ||||| ||| ||| |||  |||||||||||||||||||||||||||| |||||| |||||| ||| ||||| |||||||  |||||||||| |     
T  11275117 gcttcaacctttttcctatgcctaatgtcttcatctttgtacttctcagcttcattgatcatcctctcaatttcctcttttgacagtcttcccttgttat 11275216  T
Q  119 ttattattttaa 130  Q
    ||| ||||||||    
T  11275217 ttactattttaa 11275228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 11165506 - 11165602
Alignment:
Q  19 gcttctaccttcttcatatacctcttgtcttcatctttgtacttctcagcttctttgatcttcctcttaatatcctcctttgacaaccttcccttgt 115  Q
    ||||| ||||||||| ||| |||| |||||||||||||||| |||||||||||| | ||| |||| | ||  ||||||||||||| |||||| ||||    
T  11165506 gcttcaaccttcttcctatgcctcatgtcttcatctttgtatttctcagcttctcttatcatcctatcaacttcctcctttgacagccttcctttgt 11165602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 11169733 - 11169844
Alignment:
Q  19 gcttctaccttcttcatatacctcttgtcttcatctttgtacttctcagcttctttgatcttcctcttaatatcctcctttgacaaccttcccttgtcac 118  Q
    ||||| ||||||||| ||| |||| |||||||||||||||| || ||||||||| | ||| |||| | ||  ||||||| |||||  ||||||||||||     
T  11169733 gcttcaaccttcttcctatgcctcatgtcttcatctttgtatttgtcagcttctcttatcatcctatcaacttcctcctgtgacagtcttcccttgtcat 11169832  T
Q  119 ttattattttaa 130  Q
    ||| ||||||||    
T  11169833 ttactattttaa 11169844  T

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Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 121
Target Start/End: Complemental strand, 11315674 - 11315600
Alignment:
Q  47 cttcatctttgtacttctcagcttctttgatcttcctcttaatatcctcctttgacaaccttcccttgtcactta 121  Q
    |||| |||||||||||||||||||| ||||||||||||| ||| |||| | |||||  |||| ||||||||||||    
T  11315674 cttcgtctttgtacttctcagcttcgttgatcttcctctcaatttccttcattgaccgccttaccttgtcactta 11315600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 311
Target Start/End: Original strand, 11169972 - 11170025
Alignment:
Q  258 tccaagcaagttgttttccctagctattttcctctcaccttcataaacatgaat 311  Q
    ||| ||||||||||| ||| ||| ||||| ||||||||| ||||||||||||||    
T  11169972 tcctagcaagttgttgtccttagttatttgcctctcaccctcataaacatgaat 11170025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 312
Target Start/End: Original strand, 12527925 - 12527978
Alignment:
Q  259 ccaagcaagttgttttccctagctattttcctctcaccttcataaacatgaatt 312  Q
    ||||||||||||||||| ||||||||  | ||||| || |||||||||||||||    
T  12527925 ccaagcaagttgttttcgctagctatcattctctcgccctcataaacatgaatt 12527978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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