View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9570_low_10 (Length: 293)
Name: NF9570_low_10
Description: NF9570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9570_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 48500383 - 48500647
Alignment:
| Q |
19 |
atcctccacttcaacacactcccttccatctctttacttaacctccaccctacttcttctccgtattcatcccctgctattacaaccgacccgctcttac |
118 |
Q |
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| T |
48500383 |
atcctccacttcaacacactcccttccatctctttacttaacctccaccctacttcttctccgtattcatcccctgctattacaaccgacccgctcttac |
48500482 |
T |
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| Q |
119 |
taaacggtctatttgccccgacatatcgccccctcaacccatgaatcgggtcatcacctgtgggcttccacgagcccacttcttggcccgtcatattatc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48500483 |
taaacggtctatttgccccgacatatcgccccctcaacccatgaatcgggtcatcacctgtgggcttccacgagcccacttcttggcccgtcatattatc |
48500582 |
T |
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| Q |
219 |
atgcaaaacaacatcaaatatagctgcgttcccctccgcgtcttgatccattctccaaccctttg |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
48500583 |
atgcaaaacaacatcaaatatagctgcgttcccctccgcgtcttgatccattctccaactctttg |
48500647 |
T |
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