View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9570_low_11 (Length: 271)
Name: NF9570_low_11
Description: NF9570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9570_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 267
Target Start/End: Complemental strand, 43227362 - 43227111
Alignment:
| Q |
17 |
atgtactttggtgtctctcatgaagatagaaggaaatttgagtggatcagttgttttttctccattatgtcatttgtttgtctctccatcgaccatcgtc |
116 |
Q |
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| T |
43227362 |
atgtactttggtgtctctcatgaagatagaaggaaatttgagtggatcagttgttttttctccattatgtcgtttgtttgtctctccattgaccatcgtc |
43227263 |
T |
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| Q |
117 |
gcgaacaacgtgaggaagaacgtctcgaacaacctgttccttttaaaattattattaaggacaaaggggtttagagttattgtttgacattcacc-nnnn |
215 |
Q |
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| T |
43227262 |
gcgaacaacgcgaagaagaacgtctcgaacaacctgttccttttaaaattattattaaggacaaaggggtttagacttattgtttgacattcaccaataa |
43227163 |
T |
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| Q |
216 |
nnnntgaatattttgttaaggtttgctttgatgtgattgttctctgcttctc |
267 |
Q |
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| T |
43227162 |
aaaatgaatattttgttaaggtttgctttgatgtgattgttctttgtttctc |
43227111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 38 - 258
Target Start/End: Complemental strand, 43236849 - 43236630
Alignment:
| Q |
38 |
gaagatagaaggaaatttgagtggatcagttgttttttctccattatgtcatttgtttgtctctccatcgaccatcgtcgcgaacaacgtgaggaagaac |
137 |
Q |
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| T |
43236849 |
gaagatagaaggatatttgagtgggcaagttgttttttctccattatatcatttgtttgtatatggatcgattatcgccgcgaagaacgcgaagaagaac |
43236750 |
T |
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| Q |
138 |
gtctcgaacaacctgttccttttaaaattattattaaggacaaaggggtttagagttattgtttgacattcaccnnnnnnnntgaatattttgttaaggt |
237 |
Q |
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| T |
43236749 |
gtcttgaacaacccgttccttttaaaattattattaaggacaaaagggtttagacttattg-ttgtcattcacaagaaaaaaagaatattttgttaaggt |
43236651 |
T |
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| Q |
238 |
ttgctttgatgtgattgttct |
258 |
Q |
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| T |
43236650 |
ttgctttgatgtaattgttct |
43236630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 43244901 - 43244853
Alignment:
| Q |
152 |
gttccttttaaaattattattaaggacaaaggggtttagagttattgtt |
200 |
Q |
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| T |
43244901 |
gttccttttaaaattattattaaggacaaaaggttttagatttattgtt |
43244853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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