View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9570_low_12 (Length: 256)
Name: NF9570_low_12
Description: NF9570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9570_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 55310593 - 55310344
Alignment:
| Q |
1 |
tagaaatttaaattgaaaagagtggtggatagttccaagaaacttaaattagaaaatatatctatcgagggagatgaaaacgatccttggcggccag--- |
97 |
Q |
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| T |
55310593 |
tagaaatttaaattgaaaagagtggtggatagttccaagaaacttaaattggaaaatatatctatcgagggagatgaaaacgatccttggcggccagggc |
55310494 |
T |
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| Q |
98 |
---aaaccattcatacaattcgtggnnnnnnnctcttctttataagcatacaatttgtggttctgtttattccccgtttcattcatatttct-tattttc |
193 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
55310493 |
cagaaaccattcatacaattcgtggttttttcttcttctttataagcatacaatttgtggttctgtttattccccgtttcattcatatttctctattttc |
55310394 |
T |
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| Q |
194 |
tttcccatccaactttacatttttcccttatttcagctcaagcctatgct |
243 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
55310393 |
tttcccatccaactttacattttttccttatttcagctcaagcctatgct |
55310344 |
T |
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