View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9570_low_16 (Length: 245)
Name: NF9570_low_16
Description: NF9570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9570_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 232
Target Start/End: Complemental strand, 143722 - 143501
Alignment:
| Q |
11 |
atataattcatgaaaaataataagatatgttttgaaattctaacaaaatcaactagtactaagaactacttcaaacgaaatacaccaataactctaagaa |
110 |
Q |
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| T |
143722 |
atataattcatgaaaaataataagatatgtttggaaattctaacaaaatcaactagtactaagaactacttcaaacgaaatacaccaataactctaagaa |
143623 |
T |
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| Q |
111 |
aattgacagcagcaaataagaaaattgcaattccaacaacagttgaactgattctccaaggatcacgaaaatacactgatctcaacattcccatataatg |
210 |
Q |
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| T |
143622 |
aattgacagcagcaaataagaaaattgcaattccaacaacagttgaactgattctccaaggatcacgaaaatacactgatctcaacattcccatataatg |
143523 |
T |
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| Q |
211 |
tttccaccggttattatgatgt |
232 |
Q |
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|||||||| |||||||| |||| |
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| T |
143522 |
tttccaccagttattataatgt |
143501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 106251 - 106324
Alignment:
| Q |
143 |
ccaacaacagttgaactgattctccaaggatcacgaaaatacactgatctcaacattcccatataatgtttcca |
216 |
Q |
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| T |
106251 |
ccaacaatagttgagctgaatctccaaggatcacgaaaataaactgatctcagcattcccatataatgcttcca |
106324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 11 - 232
Target Start/End: Original strand, 45957935 - 45958160
Alignment:
| Q |
11 |
atataattcatgaaaaataataagatatgttttgaaattctaacaaaatcaactagtactaa----gaactacttcaaacgaaatacaccaataactcta |
106 |
Q |
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| T |
45957935 |
atataattcatgaaaaataatatgatatgtgtggaaattctaacaaaatcaactagtactaaaaattaattacttcagacgaactgcaccaataactcta |
45958034 |
T |
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| Q |
107 |
agaaaattgacagcagcaaataagaaaattgcaattccaacaacagttgaactgattctccaaggatcacgaaaatacactgatctcaacattcccatat |
206 |
Q |
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|||||||||||| |||||||||||||||| |||||||| |||||||||||||| | |||| |||||||||||| |||||||| || ||||||||||||| |
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| T |
45958035 |
agaaaattgacaacagcaaataagaaaatagcaattcccacaacagttgaactaagcctccgaggatcacgaaagtacactgaccttaacattcccatat |
45958134 |
T |
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| Q |
207 |
aatgtttccaccggttattatgatgt |
232 |
Q |
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|||||||||||| |||||||| |||| |
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| T |
45958135 |
aatgtttccaccagttattataatgt |
45958160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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