View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9570_low_20 (Length: 237)
Name: NF9570_low_20
Description: NF9570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9570_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 21655056 - 21654849
Alignment:
| Q |
13 |
caaagggataaattgtgtgtgaagagctacctttctcagcattggaaacgcacaaacaattgttgagtggatattaaaagctgagaaaggccggatattc |
112 |
Q |
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| T |
21655056 |
caaagggataaattgtgtgtgaagagctacctttctcagcattggaaacacacaaacaaatgttgagtggatattaaaagctgagaaaggctggatattg |
21654957 |
T |
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| Q |
113 |
tatattctaaaagtctgaatataagcaggttttgatttgatttttcaatgaggaagtcgttccaattttcctaaaagaatgcatttaatgtggcatgaga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21654956 |
tatattctaaaagtctgaatataagcaggttttgatttga-ttttcaatgaagaagccgttccaattttcctaaaagaatgcatttaatgtggcatgaga |
21654858 |
T |
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| Q |
213 |
ataggaagg |
221 |
Q |
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||||||||| |
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| T |
21654857 |
ataggaagg |
21654849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 114 - 220
Target Start/End: Original strand, 23009254 - 23009359
Alignment:
| Q |
114 |
atattctaaaagtctgaatataagcaggttttgatttgatttttcaatgaggaagtcgttccaattttcctaaaagaatgcatttaatgtggcatgagaa |
213 |
Q |
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|||||||||||||||||| |||||||||||||| ||||||||| ||||| ||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
23009254 |
atattctaaaagtctgaaaataagcaggttttgttttgatttt-caatgcggaagtcgttccatcatttctaaaagaatgcatttaatgtggcatgagaa |
23009352 |
T |
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| Q |
214 |
taggaag |
220 |
Q |
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||||||| |
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| T |
23009353 |
taggaag |
23009359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 24766783 - 24766729
Alignment:
| Q |
37 |
agctacctttctcagcattggaaacgcacaaacaattgttgagtggatattaaaa |
91 |
Q |
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||||||||||||| ||||| |||| |||||||||||| |||||||||||||||| |
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| T |
24766783 |
agctacctttctctgcattcaaaacacacaaacaattgctgagtggatattaaaa |
24766729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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