View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9570_low_3 (Length: 332)
Name: NF9570_low_3
Description: NF9570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9570_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 16 - 318
Target Start/End: Complemental strand, 20372923 - 20372621
Alignment:
| Q |
16 |
gcaatcaaatcaagagaaagcactcatcactaccttcaactgctgcaaatatgctgactaatcaagattcggtgaaagaaaataactcgaaagttcctaa |
115 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
20372923 |
gcaatcaaataaagagaaaggactcatcactaccttcaactgctgctaatatgctgactaatcaagattcagcgaaagaaaataactcgaaagttcctaa |
20372824 |
T |
|
| Q |
116 |
gttaacaacagaaggaggacctagctgcctaactccaacaacaacaaatactaatggtgtaatattagaagataatgtcactattgttgctgatgaaaat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
20372823 |
gttaacaacagaaggaggacctagctgcctaactccaacaacaacaaatactaatggtgtaatagtagaagataatgtcactattgttgctgatgaaaat |
20372724 |
T |
|
| Q |
216 |
gttcaatccgattctattgttatcgatcttgatagccagacaccggagcctgttaaaggagaacctagctgtctaactgcaacaacaacagatactaatg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20372723 |
gttcaatccgattctattgttatcgatcttgatagccagacaccggagcctgttaaaggagaacctagctgtctaactgcaacaacaacagatactaatg |
20372624 |
T |
|
| Q |
316 |
gtg |
318 |
Q |
| |
|
||| |
|
|
| T |
20372623 |
gtg |
20372621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 16 - 318
Target Start/End: Complemental strand, 20365145 - 20364843
Alignment:
| Q |
16 |
gcaatcaaatcaagagaaagcactcatcactaccttcaactgctgcaaatatgctgactaatcaagattcggtgaaagaaaataactcgaaagttcctaa |
115 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
20365145 |
gcaatcaaataaagagaaagcactcatcactaccttcaactgctgcaaatatgctgactaatcaagattcagcgaaagaaaataactcgaaagttcctaa |
20365046 |
T |
|
| Q |
116 |
gttaacaacagaaggaggacctagctgcctaactccaacaacaacaaatactaatggtgtaatattagaagataatgtcactattgttgctgatgaaaat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
20365045 |
gttaacaacagaaggaggacctagctgcctaactccaacaacaacaaatactaatggtgtaatagtagaagataatgtcactattgttgctgatgaaaat |
20364946 |
T |
|
| Q |
216 |
gttcaatccgattctattgttatcgatcttgatagccagacaccggagcctgttaaaggagaacctagctgtctaactgcaacaacaacagatactaatg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
20364945 |
gttcaatccgattctattgttatcgatcttgatagccagacactagagcctgttaaaggagaacctagccgtctaactgcaacaacaacaaatactaatg |
20364846 |
T |
|
| Q |
316 |
gtg |
318 |
Q |
| |
|
||| |
|
|
| T |
20364845 |
gtg |
20364843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 16 - 272
Target Start/End: Complemental strand, 20385557 - 20385292
Alignment:
| Q |
16 |
gcaatcaaatcaagagaaagcactcatcactaccttcaactgctgcaaatatgctgactaatcaagattcggtgaaagaaaataactcgaaagttcctaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| | ||||||||| | |||||||||||| || |
|
|
| T |
20385557 |
gcaatcaaatcaagagaaagcactcatcactaccttcaactgctccaaatatgttgactaatcaagattcagcgaaagaaaacacctcgaaagttcccaa |
20385458 |
T |
|
| Q |
116 |
gttaacaacagaaggaggacctagctgcctaactccaacaacaacaaatactaatggtgtaatattagaagataatgtcactattgttgctgatgaaaat |
215 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
20385457 |
gttaacaacagaaggagaacctagctgcctaactgcaacaacaacaaatactaatggtgcaatagtagaagataatgtcactattgctgcggatgaaaat |
20385358 |
T |
|
| Q |
216 |
gttcaatccgattctatt-gt--------tatcgatcttgatagccagacaccggagcctgttaaa |
272 |
Q |
| |
|
|||||||||||||||||| || |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
20385357 |
gttcaatccgattctattcgttgtaaatgtatcgatcttgaaagccagacaccggagcctgttaaa |
20385292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 127 - 318
Target Start/End: Complemental strand, 20364890 - 20364699
Alignment:
| Q |
127 |
aaggaggacctagctgcctaactccaacaacaacaaatactaatggtgtaatattagaagataatgtcactattgttgctgatgaaaatgttcaatccga |
226 |
Q |
| |
|
|||||| ||||||| | |||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
20364890 |
aaggagaacctagccgtctaactgcaacaacaacaaatactaatggtgtcatagtagaagataatgtcactattgttgctgatgaaaattttcaatccga |
20364791 |
T |
|
| Q |
227 |
ttctattgttatcgatcttgatagccagacaccggagcctgttaaaggagaacctagctgtctaactgcaacaacaacagatactaatggtg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
20364790 |
ttctattgttatcgatcttgatagccagacaccggagcctgttaaaggagaacctagctgtctaactgcaacaacaacaaatactaatggtg |
20364699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 127 - 272
Target Start/End: Complemental strand, 20364746 - 20364601
Alignment:
| Q |
127 |
aaggaggacctagctgcctaactccaacaacaacaaatactaatggtgtaatattagaagataatgtcactattgttgctgatgaaaatgttcaatccga |
226 |
Q |
| |
|
|||||| ||||||||| |||||| ||||||||||||||||||||||||| ||| |||||||||||||||||| |||||| ||||||||||||| |||||| |
|
|
| T |
20364746 |
aaggagaacctagctgtctaactgcaacaacaacaaatactaatggtgtcatagtagaagataatgtcactaatgttgcggatgaaaatgttctatccga |
20364647 |
T |
|
| Q |
227 |
ttctattgttatcgatcttgatagccagacaccggagcctgttaaa |
272 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
20364646 |
ttctattgttatcgatcttgatagccagataccagagcctgttaaa |
20364601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 127 - 272
Target Start/End: Complemental strand, 20372668 - 20372520
Alignment:
| Q |
127 |
aaggaggacctagctgcctaactccaacaacaacaaatactaatggtgtaatattagaagataatgtcactattgttgctgatgaaaatgttcaat---c |
223 |
Q |
| |
|
|||||| ||||||||| |||||| ||||||||||| ||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
20372668 |
aaggagaacctagctgtctaactgcaacaacaacagatactaatggtgtcatagtggaagataatgtcactattgttgctgatgaaaatgttcaatcggc |
20372569 |
T |
|
| Q |
224 |
cgattctattgttatcgatcttgatagccagacaccggagcctgttaaa |
272 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
20372568 |
cgattctattgttatcgatcttgatatccagataccggagcctgttaaa |
20372520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 20385446 - 20385399
Alignment:
| Q |
271 |
aaggagaacctagctgtctaactgcaacaacaacagatactaatggtg |
318 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
20385446 |
aaggagaacctagctgcctaactgcaacaacaacaaatactaatggtg |
20385399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 20344293 - 20344245
Alignment:
| Q |
96 |
aataactcgaaagttcctaagttaacaacagaaggaggacctagctgcc |
144 |
Q |
| |
|
||||||||||||| |||||||||||| | ||||||| ||||||||||| |
|
|
| T |
20344293 |
aataactcgaaaggtcctaagttaactattgaaggagaacctagctgcc |
20344245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University