View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9570_low_5 (Length: 331)
Name: NF9570_low_5
Description: NF9570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9570_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 41006975 - 41006654
Alignment:
| Q |
1 |
agttttgactctgattattaaacattggtcttatagaatagaactaaaccagtgttgtcgatggcggatgatggaaggccagaagtacgccatataaaca |
100 |
Q |
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| T |
41006975 |
agttttgactctgattattaaacattggtcttatagaatagaactaaaccagtgttgtcgatggcggatgatggaaggccagaagtacgccatataaaca |
41006876 |
T |
|
| Q |
101 |
tgccattgtggcctatggcaccaccatggcaggcatccctccaccattttcctgtggcgattgtaaaaaatccaccacagcatttccaccttgg----ca |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
41006875 |
tgccattgtggcctatggcaccaccatggcaggcatccctccaccattttcctgtggcgattgtaaaaaatccaccacagcatttccaccttggctgcca |
41006776 |
T |
|
| Q |
197 |
tttaacactaaactaacacaaatttttcaacaatgaacttcaacacttggaatgcactacttacttaga----atatatatatccctaattttgttatca |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
41006775 |
tttaacactaaactaacacaaatttttcaacaatgaacttcaacacttggaatgcactactcacttagaatatatatatatatccctaattttgttatca |
41006676 |
T |
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| Q |
293 |
acttgaacttttacctatcatt |
314 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
41006675 |
acttgaacttttacctatcatt |
41006654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 49824463 - 49824416
Alignment:
| Q |
89 |
gccatataaacatgccattgtggcctatggcaccaccatggcaggcat |
136 |
Q |
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| T |
49824463 |
gccatataaacacaccattgtggcctatggcaccaccatggccggcat |
49824416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 53253608 - 53253553
Alignment:
| Q |
74 |
gaaggccagaagtacgccatataaacatgccattgtggcctatggcaccaccatgg |
129 |
Q |
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| T |
53253608 |
gaaggccaaaaatccgccatataaaaatgccattgtggcctatggcgccgccatgg |
53253553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 170
Target Start/End: Original strand, 19060379 - 19060454
Alignment:
| Q |
95 |
taaacatgccattgtggcctatggcaccaccatggcaggcatccctccaccattttcctgtggcgattgtaaaaaa |
170 |
Q |
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| T |
19060379 |
taaacataccattgtggcctatggcactgccatggcagccatcccttcacaagttgcctatggcggttgtcaaaaa |
19060454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 140
Target Start/End: Original strand, 12112987 - 12113060
Alignment:
| Q |
67 |
gatgatggaaggccagaagtacgccatataaacatgccattgtggcctatggcaccaccatggcaggcatccct |
140 |
Q |
| |
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|||| ||||||||| |||| |||||||||||||||||||| |||| |||||| ||||||| ||||||||| |
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| T |
12112987 |
gatggtggaaggccgaaagtctgccatataaacatgccattgcaacctaaggcacctccatggcgggcatccct |
12113060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 17355830 - 17355786
Alignment:
| Q |
73 |
ggaaggccagaagtacgccatataaacatgccattgtggcctatg |
117 |
Q |
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| T |
17355830 |
ggaaggccaaaaattcgccatataaacatgccattgcggcctatg |
17355786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 20259316 - 20259276
Alignment:
| Q |
89 |
gccatataaacatgccattgtggcctatggcaccaccatgg |
129 |
Q |
| |
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|||||||||||||||||||| | |||||||| ||||||||| |
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|
| T |
20259316 |
gccatataaacatgccattgcgacctatggcgccaccatgg |
20259276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 53168265 - 53168317
Alignment:
| Q |
89 |
gccatataaacatgccattgtggcctatggcaccaccatggcaggcatccctc |
141 |
Q |
| |
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||||||| |||| |||||||||||| ||||||||| ||||||||||| |||| |
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| T |
53168265 |
gccatatgaacaagccattgtggcccttggcaccacaatggcaggcattcctc |
53168317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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