View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9570_low_6 (Length: 324)

Name: NF9570_low_6
Description: NF9570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9570_low_6
NF9570_low_6
[»] chr2 (10 HSPs)
chr2 (35-309)||(37319715-37319987)
chr2 (89-180)||(14540613-14540704)
chr2 (89-180)||(6028060-6028151)
chr2 (88-180)||(19105011-19105103)
chr2 (98-180)||(31942356-31942438)
chr2 (97-180)||(37472900-37472983)
chr2 (92-180)||(37106529-37106617)
chr2 (97-180)||(44746280-44746363)
chr2 (102-178)||(10644049-10644125)
chr2 (17-57)||(11009046-11009086)
[»] chr3 (17 HSPs)
chr3 (96-180)||(42758208-42758292)
chr3 (88-180)||(34119484-34119576)
chr3 (88-180)||(53631730-53631822)
chr3 (90-180)||(31126965-31127055)
chr3 (88-169)||(1722784-1722865)
chr3 (88-180)||(4016214-4016306)
chr3 (88-180)||(30682647-30682739)
chr3 (96-180)||(41937172-41937256)
chr3 (99-180)||(54316981-54317062)
chr3 (88-180)||(4557475-4557567)
chr3 (88-180)||(19111561-19111653)
chr3 (90-180)||(830837-830927)
chr3 (88-170)||(55438860-55438942)
chr3 (102-180)||(55225255-55225333)
chr3 (105-152)||(43582420-43582467)
chr3 (107-180)||(48390987-48391060)
chr3 (92-152)||(49579893-49579953)
[»] chr5 (20 HSPs)
chr5 (88-180)||(3573050-3573142)
chr5 (3-180)||(18206758-18206935)
chr5 (88-180)||(27088522-27088614)
chr5 (93-180)||(30115314-30115401)
chr5 (88-180)||(2412897-2412989)
chr5 (88-180)||(2984974-2985065)
chr5 (97-180)||(8453543-8453626)
chr5 (88-163)||(35194177-35194252)
chr5 (97-180)||(38006640-38006723)
chr5 (100-180)||(12447219-12447299)
chr5 (97-180)||(3564899-3564982)
chr5 (97-152)||(13402202-13402257)
chr5 (102-167)||(29246136-29246201)
chr5 (91-180)||(42717803-42717887)
chr5 (88-180)||(33862355-33862446)
chr5 (105-180)||(35311665-35311740)
chr5 (125-180)||(6156090-6156145)
chr5 (105-180)||(17853463-17853538)
chr5 (97-180)||(27302904-27302987)
chr5 (106-152)||(12834775-12834821)
[»] scaffold0027 (1 HSPs)
scaffold0027 (89-178)||(6233-6322)
[»] chr1 (19 HSPs)
chr1 (99-180)||(34673452-34673533)
chr1 (88-180)||(29871455-29871547)
chr1 (88-180)||(9983060-9983152)
chr1 (88-180)||(35936987-35937079)
chr1 (88-180)||(12494837-12494929)
chr1 (96-180)||(16433331-16433415)
chr1 (88-162)||(2514475-2514549)
chr1 (88-180)||(44615646-44615738)
chr1 (88-180)||(44792831-44792923)
chr1 (88-180)||(44632306-44632398)
chr1 (96-180)||(49741177-49741261)
chr1 (105-180)||(34060190-34060265)
chr1 (105-180)||(45866356-45866431)
chr1 (105-152)||(19572710-19572757)
chr1 (105-180)||(50426826-50426901)
chr1 (106-152)||(3628186-3628232)
chr1 (106-152)||(13390293-13390339)
chr1 (106-180)||(40087634-40087708)
chr1 (100-145)||(39921713-39921758)
[»] chr7 (27 HSPs)
chr7 (88-180)||(12980207-12980299)
chr7 (96-180)||(5376924-5377008)
chr7 (96-180)||(18826042-18826126)
chr7 (96-180)||(3920377-3920461)
chr7 (96-180)||(23328448-23328532)
chr7 (96-180)||(26004691-26004775)
chr7 (88-180)||(26622782-26622874)
chr7 (88-180)||(16078844-16078936)
chr7 (88-180)||(37579093-37579185)
chr7 (99-180)||(27850496-27850576)
chr7 (95-180)||(5916236-5916321)
chr7 (125-180)||(24425249-24425303)
chr7 (105-180)||(43507280-43507355)
chr7 (102-180)||(17120510-17120588)
chr7 (106-180)||(37196169-37196243)
chr7 (115-180)||(2630744-2630809)
chr7 (17-57)||(17851614-17851654)
chr7 (92-180)||(44986069-44986157)
chr7 (128-180)||(46127350-46127402)
chr7 (105-180)||(3227714-3227789)
chr7 (102-153)||(3274848-3274899)
chr7 (102-145)||(26874210-26874253)
chr7 (102-137)||(27454678-27454713)
chr7 (97-152)||(35074308-35074363)
chr7 (105-180)||(38139964-38140039)
chr7 (105-152)||(39316842-39316889)
chr7 (105-152)||(41741648-41741695)
[»] scaffold0022 (1 HSPs)
scaffold0022 (96-180)||(90431-90515)
[»] chr6 (11 HSPs)
chr6 (88-180)||(12678264-12678355)
chr6 (88-180)||(14411003-14411095)
chr6 (89-180)||(14032383-14032474)
chr6 (96-180)||(14505920-14506004)
chr6 (101-180)||(7394057-7394136)
chr6 (88-151)||(11762271-11762334)
chr6 (88-180)||(24603026-24603116)
chr6 (96-182)||(14245081-14245167)
chr6 (88-178)||(30816084-30816173)
chr6 (116-180)||(32532417-32532481)
chr6 (21-56)||(5863677-5863712)
[»] chr4 (25 HSPs)
chr4 (88-180)||(29755501-29755593)
chr4 (96-180)||(37348963-37349047)
chr4 (89-180)||(19534288-19534379)
chr4 (96-180)||(425663-425747)
chr4 (88-179)||(37107243-37107334)
chr4 (89-180)||(7985293-7985384)
chr4 (88-180)||(1724481-1724573)
chr4 (88-180)||(12825632-12825724)
chr4 (102-178)||(43228617-43228693)
chr4 (88-169)||(9230115-9230197)
chr4 (96-180)||(26564671-26564755)
chr4 (88-163)||(39188347-39188422)
chr4 (97-182)||(28695311-28695397)
chr4 (106-182)||(13770624-13770700)
chr4 (105-180)||(31752304-31752379)
chr4 (105-152)||(39046801-39046848)
chr4 (97-180)||(42299631-42299714)
chr4 (102-145)||(52602945-52602988)
chr4 (90-180)||(6482207-6482296)
chr4 (97-154)||(13015570-13015627)
chr4 (1-57)||(44317278-44317334)
chr4 (102-145)||(30021606-30021649)
chr4 (105-180)||(42774609-42774684)
chr4 (100-145)||(50684330-50684375)
chr4 (21-57)||(15987534-15987570)
[»] scaffold0294 (1 HSPs)
scaffold0294 (101-180)||(14614-14693)
[»] scaffold0014 (1 HSPs)
scaffold0014 (88-180)||(14315-14407)
[»] scaffold0007 (1 HSPs)
scaffold0007 (88-180)||(197497-197589)
[»] chr8 (16 HSPs)
chr8 (88-180)||(1012443-1012535)
chr8 (89-180)||(34139274-34139365)
chr8 (88-178)||(36132088-36132178)
chr8 (96-180)||(24568773-24568857)
chr8 (88-180)||(34021304-34021396)
chr8 (106-180)||(20399435-20399509)
chr8 (90-180)||(35215332-35215422)
chr8 (96-180)||(17469089-17469173)
chr8 (97-180)||(45235899-45235982)
chr8 (105-167)||(39445751-39445813)
chr8 (96-180)||(29089544-29089627)
chr8 (105-180)||(27932255-27932330)
chr8 (106-180)||(40248518-40248592)
chr8 (97-138)||(14186166-14186207)
chr8 (106-178)||(11255177-11255249)
chr8 (88-180)||(43113796-43113888)
[»] scaffold0036 (1 HSPs)
scaffold0036 (88-180)||(33219-33311)
[»] scaffold0135 (1 HSPs)
scaffold0135 (88-169)||(35981-36063)
[»] scaffold0097 (1 HSPs)
scaffold0097 (98-180)||(33419-33501)
[»] scaffold0095 (1 HSPs)
scaffold0095 (105-167)||(32713-32775)
[»] scaffold0189 (1 HSPs)
scaffold0189 (105-180)||(4099-4174)
[»] scaffold0113 (1 HSPs)
scaffold0113 (107-145)||(41559-41597)
[»] scaffold0519 (1 HSPs)
scaffold0519 (106-178)||(10144-10216)


Alignment Details
Target: chr2 (Bit Score: 148; Significance: 4e-78; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 35 - 309
Target Start/End: Original strand, 37319715 - 37319987
Alignment:
Q  35 atccccttccccacattgaataannnnnnnnaatataaaattgaagnnnnnnngcaacccttagagaaatgttgtaatgcattatccagtaatatgctca 134  Q
    |||||| ||||||||||||||||        |||||||||||||||       ||||||| ||||||||| ||| |||||||||||||| |||||| |||    
T  37319715 atccccctccccacattgaataattttttttaatataaaattgaagtttttttgcaacccctagagaaatattgaaatgcattatccagcaatatgttca 37319814  T
Q  135 ttttaacatttgttagaccggttgatttaattgctcttttaaatattacctgtgactctcaatttcctcatttatcnnnnnnncttagttcgcattctct 234  Q
    |||||||||||||||||||| |||||||| |||||  ||||||||| || |||||||||||||| |||||||||||       |||||||||||||||||    
T  37319815 ttttaacatttgttagaccgattgatttagttgctactttaaatatcacttgtgactctcaattccctcatttatcttttt--cttagttcgcattctct 37319912  T
Q  235 tccatagtaggtggagattatcactgcattccatctgtcattttcccctctatcttattttctttcttctccttg 309  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37319913 tccatagtaggtggagattatcactgcattccatctgttattttcccctctatcttattttctttcttctccttg 37319987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 89 - 180
Target Start/End: Original strand, 14540613 - 14540704
Alignment:
Q  89 caacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||| | |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| | |||||||| |||||| |||||||||    
T  14540613 caaccccttgagaaatgttgtaatgcattatccagcaatatgctcactttaacatttgttagactgattgatttagttgctcctttaaatat 14540704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 89 - 180
Target Start/End: Complemental strand, 6028151 - 6028060
Alignment:
Q  89 caacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||| |||||||||||||||||||||||||||  ||||| |||| ||||||||||||||||||  |||||||| |||||| |||||||||    
T  6028151 caacccctagagaaatgttgtaatgcattatccatcaatattctcactttaacatttgttagaccaattgatttagttgctcctttaaatat 6028060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 19105103 - 19105011
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||| | ||||||||||||||| |||| |  || |||||||||| ||||||||||||||||||| | |||||| ||||||||||||||||    
T  19105103 gcaaccccttgagaaatgttgtaatacattgtttagcaatatgctcactttaacatttgttagaccgatcgatttagttgctcttttaaatat 19105011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 31942438 - 31942356
Alignment:
Q  98 gagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||| |||||||||||||||||  |||||| ||| |||||||||||||||||||  ||||||| |||||| |||||||||    
T  31942438 gagaaatattgtaatgcattatccaacaatatgttcactttaacatttgttagaccgactgatttagttgctcctttaaatat 31942356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 180
Target Start/End: Complemental strand, 37472983 - 37472900
Alignment:
Q  97 agagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||| |||||||| |||||||||  |||||||||| ||||||||||||||||| |  ||||||| ||| || |||||||||    
T  37472983 agagaaacgttgtaatacattatccaacaatatgctcactttaacatttgttagacagaatgatttagttgatcctttaaatat 37472900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 92 - 180
Target Start/End: Original strand, 37106529 - 37106617
Alignment:
Q  92 cccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||| |||| || |||||||| |||||||||  |||||||||| ||||||||||||||||| |  ||||||| ||| || |||||||||    
T  37106529 ccctaagagcaacgttgtaatacattatccaacaatatgctcactttaacatttgttagacggaatgatttagttgatcctttaaatat 37106617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 180
Target Start/End: Complemental strand, 44746363 - 44746280
Alignment:
Q  97 agagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||| ||||||||||| |||||||||  |||||||||| | ||||||||||||||| |  | ||||| |||||| |||||||||    
T  44746363 agagcaatgttgtaatacattatccaacaatatgctcactctaacatttgttagacggaataatttatttgctcctttaaatat 44746280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 178
Target Start/End: Complemental strand, 10644125 - 10644049
Alignment:
Q  102 aatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaat 178  Q
    ||||||||||||||||||| || |||||||||  ||||||||||  |  ||||  | ||||| ||||||||||||||    
T  10644125 aatgttgtaatgcattatcgagcaatatgctccctttaacatttccttaaccgaataatttagttgctcttttaaat 10644049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 11009086 - 11009046
Alignment:
Q  17 tcctcgacgggttcgggtatccccttccccacattgaataa 57  Q
    |||||||||||||||||||||||| | ||| ||||||||||    
T  11009086 tcctcgacgggttcgggtatccccgttcccgcattgaataa 11009046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 42758208 - 42758292
Alignment:
Q  96 tagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  42758208 tagagaaatgttgtaatgcattatcaagaaatacgctcattttaacatttgttagaccggttgatttaattgctcctttaaatat 42758292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 34119484 - 34119576
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||||||| ||||||||||||||||||||||||  |||||||||| ||||||||||||||||||| |||||||| |||||| ||| |||||    
T  34119484 gcaacccttacagaaatgttgtaatgcattatccaacaatatgctcactttaacatttgttagaccgattgatttagttgctcatttcaatat 34119576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 53631730 - 53631822
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||||||||||||||||||||||||||||||||  |||||||||| |||| |||||||||||||| | |||||| |||||| |||||||||    
T  53631730 gcaacccttagagaaatgttgtaatgcattatccaacaatatgctcactttatcatttgttagaccgatcgatttagttgctcctttaaatat 53631822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 180
Target Start/End: Complemental strand, 31127055 - 31126965
Alignment:
Q  90 aacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||| |||||||||||||||||||||||||||  |||||||||| ||||||||||||||||| | |||||||| |||||| ||| |||||    
T  31127055 aacccctagagaaatgttgtaatgcattatccaacaatatgctcactttaacatttgttagactgattgatttagttgctcctttcaatat 31126965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 88 - 169
Target Start/End: Original strand, 1722784 - 1722865
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgct 169  Q
    ||||||| | |||||||||||||||||||||||||| |||||| |||||||||||||||||||| || ||||||| ||||||    
T  1722784 gcaaccccttgagaaatgttgtaatgcattatccagcaatatgttcattttaacatttgttagatcgattgatttgattgct 1722865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 4016306 - 4016214
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||| ||||||||| || ||||||||||||||  |||||| ||| ||||||||||||||||||| || ||||| |||||| |||||||||    
T  4016306 gcaacccctagagaaatattttaatgcattatccaacaatatgttcactttaacatttgttagaccgatttatttagttgctcctttaaatat 4016214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 30682647 - 30682739
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||| ||||| |||||||| |||||||||| || |||||| ||| |||||||||||||||| ||  |||||||||||||| |||||||||    
T  30682647 gcaacccctagaggaatgttgtgatgcattatctagcaatatgttcactttaacatttgttagaacgaatgatttaattgctcctttaaatat 30682739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 96 - 180
Target Start/End: Complemental strand, 41937256 - 41937172
Alignment:
Q  96 tagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||||||||||||||||||||||||  || ||||||| ||||||||||||||||||| |||||||| ||| || ||| |||||    
T  41937256 tagagaaatgttgtaatgcattatccaacaacatgctcactttaacatttgttagaccgattgatttagttgttcatttcaatat 41937172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 54316981 - 54317062
Alignment:
Q  99 agaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||||||||||||||||||| || ||||  || |||||||||||||||||||  ||||||||| |||||| |||||||||    
T  54316981 agaaatgttgtaatgcattatcaagaaatacacttattttaacatttgttagacatgttgatttagttgctcctttaaatat 54317062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 4557567 - 4557475
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||| || |||||| || ||||||||||||||  |||||| ||| ||||||||||||||||||| || ||||| |||||| |||||||||    
T  4557567 gcaacccctaaagaaatattctaatgcattatccaacaatatgttcactttaacatttgttagaccgatttatttagttgctcctttaaatat 4557475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 19111561 - 19111653
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||| | |||||||||||||||||||||||||  |||||| ||| |||||||||||||| |||  |||||||| || ||| |||||||||    
T  19111561 gcaacccctggagaaatgttgtaatgcattatccaacaatatgatcactttaacatttgttataccaattgatttagttactcctttaaatat 19111653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 180
Target Start/End: Original strand, 830837 - 830927
Alignment:
Q  90 aacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||| ||||||||||||||||| |||||||||| ||||||||||  ||||||||| |||||||  |||||||| || ||| || ||||||    
T  830837 aacccctagagaaatgttgtaatacattatccagcaatatgctcacgttaacattttttagaccaattgatttagtttctccttaaaatat 830927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 55438942 - 55438860
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctc 170  Q
    ||||||| |||||||||||||||||||||||| ||  |||||| | |||||||||||||||| | || |||||||| ||||||    
T  55438942 gcaacccctagagaaatgttgtaatgcattattcaacaatatgtttattttaacatttgttaaagcgattgatttagttgctc 55438860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 55225333 - 55225255
Alignment:
Q  102 aatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||||||||||||||||||  |||||| ||| |||||||||| ||  | ||  ||||||||||||||||||| ||||    
T  55225333 aatgttgtaatgcattatccatcaatatgttcactttaacatttttttaatcgaatgatttaattgctcttttatatat 55225255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 152
Target Start/End: Original strand, 43582420 - 43582467
Alignment:
Q  105 gttgtaatgcattatccagtaatatgctcattttaacatttgttagac 152  Q
    |||||||| |||||||||  |||||||||| |||||||||||||||||    
T  43582420 gttgtaatacattatccaacaatatgctcactttaacatttgttagac 43582467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 48391060 - 48390987
Alignment:
Q  107 tgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||| |||||||||  |||||| ||| || |||||||||||||| |  ||||||| ||| ||||||||||||    
T  48391060 tgtaatacattatccaacaatatgttcacttcaacatttgttagacggaatgatttagttgatcttttaaatat 48390987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 49579893 - 49579953
Alignment:
Q  92 cccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagac 152  Q
    ||||||||| || |||||||| |||||||||  |||| ||||| ||| |||||||||||||    
T  49579893 cccttagagcaacgttgtaatacattatccaacaataagctcactttcacatttgttagac 49579953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 3573050 - 3573142
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||| |||||| ||| |||||    
T  3573050 gcaacccatagagaaatgttgtaatgcattatccagcaatatgctcactttaacatttgttagaccgattgatttagttgctcctttgaatat 3573142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 180
Target Start/End: Original strand, 18206758 - 18206935
Alignment:
Q  3 gaaccccatccttatcctcgacgggttcgggtatccccttccccacattgaataannnnnnnnaatataaaattgaagnnnnnnngcaacccttagagaa 102  Q
    |||||||||||  |||| ||| ||||| |||||| ||| ||||| ||||||||||        |||| ||||||||||       |||||||||||||||    
T  18206758 gaaccccatccccatccccgatgggtttgggtattcccgtccccgcattgaataatttttttaaataaaaaattgaagtttttttgcaacccttagagaa 18206857  T
Q  103 atgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||||||||||||||| || ||||||| || ||||| ||||||||||||| |||||||| |||||| |||||||||    
T  18206858 atgttgtaatgcattatctagaaatatgcccactttaatatttgttagaccgattgatttagttgctcctttaaatat 18206935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 27088614 - 27088522
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||| ||||| |||| |||||||||||||||||| |||||||| | ||||||||||||||||||| |||||||| |||||| |||||||||    
T  27088614 gcaacctttagaaaaattttgtaatgcattatccagcaatatgcttactttaacatttgttagaccgattgatttagttgctcctttaaatat 27088522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 93 - 180
Target Start/End: Original strand, 30115314 - 30115401
Alignment:
Q  93 ccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||| | | |||||| |||||| |||||||||    
T  30115314 ccttagagaaatgttgtaatgcattatccaacaatatgctcactttaacatttgttagactgatcgatttagttgctcctttaaatat 30115401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 2412989 - 2412897
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||| ||||||||||||||| |||||||||||  |||||||||| ||||| ||||||||||||| || ||||| |||||| |||||||||    
T  2412989 gcaacccctagagaaatgttgtagtgcattatccaacaatatgctcactttaatatttgttagaccgattaatttagttgctcctttaaatat 2412897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 2984974 - 2985065
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||||||||| ||||||||||||| |||||||   |||||||||| ||||| ||||||||||||| |||||||| |||||| |||||||||    
T  2984974 gcaacccttaga-aaatgttgtaatgtattatccgacaatatgctcactttaatatttgttagaccgattgatttagttgctcctttaaatat 2985065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 180
Target Start/End: Complemental strand, 8453626 - 8453543
Alignment:
Q  97 agagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||| |||||| ||||||||| |||||||||||||||||||||||||||||| |||||  ||||||| || ||| |||||||||    
T  8453626 agagcaatgttataatgcattctccagtaatatgctcattttaacatttgtttgaccgaatgatttagttactcctttaaatat 8453543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 163
Target Start/End: Complemental strand, 35194252 - 35194177
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgattta 163  Q
    ||||||| |||||||||||||||||||||||||||| |||||| ||| |||||||||| |||||||  ||||||||    
T  35194252 gcaacccctagagaaatgttgtaatgcattatccagcaatatgttcactttaacattttttagaccaattgattta 35194177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 180
Target Start/End: Complemental strand, 38006723 - 38006640
Alignment:
Q  97 agagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||||||||| |||||||||||||  ||||||||| |||||||| ||||||||||  |||||||| |||||| |||||||||    
T  38006723 agagaaatgttgcaatgcattatccaacaatatgctcgttttaacaattgttagaccaattgatttagttgctcctttaaatat 38006640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 180
Target Start/End: Original strand, 12447219 - 12447299
Alignment:
Q  100 gaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||| |||||||||||||||||  |||||  ||| |||||||||||||||| || ||||||||| ||||| |||||||||    
T  12447219 gaaatattgtaatgcattatccaacaatatattcactttaacatttgttagatcgattgatttaactgctcctttaaatat 12447299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 180
Target Start/End: Complemental strand, 3564982 - 3564899
Alignment:
Q  97 agagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||| ||||||||||| |||||||||  |||||||||| ||||||||||||||||| |  ||||||| ||| || |||||||||    
T  3564982 agagcaatgttgtaatacattatccaacaatatgctcactttaacatttgttagacggaatgatttagttgatcctttaaatat 3564899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 152
Target Start/End: Complemental strand, 13402257 - 13402202
Alignment:
Q  97 agagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagac 152  Q
    |||| ||||||||||| |||||||||  ||||||||||||||||||||||||||||    
T  13402257 agagcaatgttgtaatacattatccaacaatatgctcattttaacatttgttagac 13402202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 167
Target Start/End: Complemental strand, 29246201 - 29246136
Alignment:
Q  102 aatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattg 167  Q
    ||||||||||| |||||||||  |||||||||| ||||||||||||||||| |  |||||||||||    
T  29246201 aatgttgtaatacattatccaacaatatgctcactttaacatttgttagacggaatgatttaattg 29246136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 180
Target Start/End: Complemental strand, 42717887 - 42717803
Alignment:
Q  91 acccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||| |||| |||||||||||| |||||||||| ||||     | |||||||||||||||||||||||||||| || ||| |||||||||    
T  42717887 acccctagataaatgttgtaatacattatccagcaata-----actttaacatttgttagaccggttgatttagtttctcctttaaatat 42717803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 33862446 - 33862355
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||||  |||||||| |||||||||||||||||  |||||| ||| ||||||||||||||| ||  |||||||| ||| || |||||||||    
T  33862446 gcaaccccaagagaaatattgtaatgcattatccaacaatatgttcactttaacatttgttag-cccattgatttagttggtcatttaaatat 33862355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 35311665 - 35311740
Alignment:
Q  105 gttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||||| |||||||||  |||||||||| ||||||||||||||||| |  ||||||| ||| || |||||||||    
T  35311665 gttgtaatacattatccaacaatatgctcactttaacatttgttagacggaatgatttagttgatcctttaaatat 35311740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 6156145 - 6156090
Alignment:
Q  125 aatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||||||| ||||||||||||||||| |  ||||||| |||||| |||||||||    
T  6156145 aatatgctcactttaacatttgttagacggaatgatttatttgctcctttaaatat 6156090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 17853538 - 17853463
Alignment:
Q  105 gttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||||| |||||||||  |||||| ||| ||||||||||||||||| |  ||||||| ||| || |||||||||    
T  17853538 gttgtaatacattatccaacaatatgttcactttaacatttgttagacggaatgatttagttgatcctttaaatat 17853463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 180
Target Start/End: Complemental strand, 27302987 - 27302904
Alignment:
Q  97 agagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||| ||||||||||| |||||||||  |||||| ||| ||||||||||||||||  |  ||||||| ||| || |||||||||    
T  27302987 agagcaatgttgtaatacattatccaacaatatgatcactttaacatttgttagatggaatgatttagttgatcctttaaatat 27302904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 12834821 - 12834775
Alignment:
Q  106 ttgtaatgcattatccagtaatatgctcattttaacatttgttagac 152  Q
    ||||||| |||||||||  |||||||||| |||||||||||||||||    
T  12834821 ttgtaatacattatccaccaatatgctcactttaacatttgttagac 12834775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 89 - 178
Target Start/End: Original strand, 6233 - 6322
Alignment:
Q  89 caacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaat 178  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||| || |||||||| |||||| |||||||    
T  6233 caacccttagagaaatgttgtaatgcattatccagcaatatgttcactttaacatttgttagatcgattgatttagttgctcctttaaat 6322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 99 - 180
Target Start/End: Complemental strand, 34673533 - 34673452
Alignment:
Q  99 agaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  34673533 agaaatgttgtaatgcattatcaagaaatacgctcattttaacatttgttagaccggttgatttagttgctcctttaaatat 34673452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 29871547 - 29871455
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||| |||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||| ||||| || |||||| |||||||||    
T  29871547 gcaacccctagagaaatgttgtaatgcattattcagcaatatgctcattttaatatttgttagaccgattgatgtagttgctcctttaaatat 29871455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 9983152 - 9983060
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||| |||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||| || ||||| |||||| ||| |||||    
T  9983152 gcaacccctagagaaatgttgtaatgtattatccagcaatatgctcactttaacatttgttagaccgattaatttagttgctcctttgaatat 9983060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 35937079 - 35936987
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||| |||| |||||||||||||||||||| || |||||||||| ||||||||||||||||||  |||||||| |||||| |||||||||    
T  35937079 gcaacccatagaaaaatgttgtaatgcattatcgagcaatatgctcactttaacatttgttagaccaattgatttagttgctcctttaaatat 35936987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 12494837 - 12494929
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||||||||||||| |||||||||||||||||  |||||| ||| ||||||||||||||||||| |  ||||| |||||| |||||||||    
T  12494837 gcaacccttagagaaatattgtaatgcattatccaacaatatgttcactttaacatttgttagaccgataaatttagttgctcctttaaatat 12494929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 180
Target Start/End: Complemental strand, 16433415 - 16433331
Alignment:
Q  96 tagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||| |||||||||||||||||||| ||||||||||||| ||||| ||||||||||||  |||||||| |||||| |||||||||    
T  16433415 tagaaaaatgttgtaatgcattatctagtaatatgctcactttaatatttgttagaccaattgatttagttgctcctttaaatat 16433331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 88 - 162
Target Start/End: Original strand, 2514475 - 2514549
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgattt 162  Q
    ||||||| |||| |||||||||||||||||||| || |||||||| ||||||||||||||||||||| |||||||    
T  2514475 gcaacccctagataaatgttgtaatgcattatcgagcaatatgcttattttaacatttgttagaccgattgattt 2514549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 44615738 - 44615646
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||| ||||||||| |||||||  ||||||||  |||||| ||| ||||||||||||||||||| |||||||| || ||| |||||||||    
T  44615738 gcaacccctagagaaattttgtaataaattatccaacaatatgttcactttaacatttgttagaccgattgatttagtttctcctttaaatat 44615646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 44792831 - 44792923
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||| ||||||||| |||||||  ||||||||  |||||| ||| ||||||||||||||||||| |||||||| || ||| |||||||||    
T  44792831 gcaacccctagagaaattttgtaataaattatccaacaatatgttcactttaacatttgttagaccgattgatttagtttctcctttaaatat 44792923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 44632398 - 44632306
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||| |||| |||| |||||||| |||||| |  |||||| ||| ||||||||||||||||||  |||||||| |||||| |||||||||    
T  44632398 gcaacccctagaaaaatattgtaatgtattatcgaacaatatgatcactttaacatttgttagacctattgatttagttgctcctttaaatat 44632306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 180
Target Start/End: Complemental strand, 49741261 - 49741177
Alignment:
Q  96 tagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||||| || ||||||||||||||  |||||| ||| |||||||||||||| |||| || ||||| |||||| |||||||||    
T  49741261 tagagaaatattctaatgcattatccaacaatatgttcactttaacatttgttaaaccgatttatttagttgctcctttaaatat 49741177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 34060265 - 34060190
Alignment:
Q  105 gttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||||| |||||||||  |||||||||| ||||||||||||||||| |  ||||||| ||| || |||||||||    
T  34060265 gttgtaattcattatccaacaatatgctcactttaacatttgttagacggaatgatttagttgatcctttaaatat 34060190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 45866431 - 45866356
Alignment:
Q  105 gttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||||||||||||||  |||||| ||| ||||||||||||||||| |  ||||||| ||| || |||||||||    
T  45866431 gttgtaatgcattatccaacaatatgttcactttaacatttgttagacagaatgatttagttgatcctttaaatat 45866356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 152
Target Start/End: Complemental strand, 19572757 - 19572710
Alignment:
Q  105 gttgtaatgcattatccagtaatatgctcattttaacatttgttagac 152  Q
    |||||||| |||||||||  |||||||||| |||||||||||||||||    
T  19572757 gttgtaatacattatccaccaatatgctcactttaacatttgttagac 19572710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 50426901 - 50426826
Alignment:
Q  105 gttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||||| |||||||||  |||||||||| |||||||||||| |||| |  ||||||| ||| || |||||||||    
T  50426901 gttgtaatacattatccaacaatatgctcactttaacatttgtaagacggaatgatttagttgatcctttaaatat 50426826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 3628232 - 3628186
Alignment:
Q  106 ttgtaatgcattatccagtaatatgctcattttaacatttgttagac 152  Q
    ||||||| |||||||||  |||||||||| |||||||||||||||||    
T  3628232 ttgtaatacattatccaacaatatgctcactttaacatttgttagac 3628186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 13390293 - 13390339
Alignment:
Q  106 ttgtaatgcattatccagtaatatgctcattttaacatttgttagac 152  Q
    ||||||| |||||||||  |||||||||| |||||||||||||||||    
T  13390293 ttgtaatacattatccaacaatatgctcactttaacatttgttagac 13390339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 180
Target Start/End: Complemental strand, 40087708 - 40087634
Alignment:
Q  106 ttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||| || ||||||  |||||||||| ||||||||||||||||| |  ||||||| ||| || |||||||||    
T  40087708 ttgtaatacagtatccaacaatatgctcactttaacatttgttagacggaatgatttagttgatcctttaaatat 40087634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 145
Target Start/End: Original strand, 39921713 - 39921758
Alignment:
Q  100 gaaatgttgtaatgcattatccagtaatatgctcattttaacattt 145  Q
    ||||||||||||||| ||||||| ||||||| ||| ||||||||||    
T  39921713 gaaatgttgtaatgcgttatccaataatatgttcactttaacattt 39921758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 12980207 - 12980299
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||| |||||||||||||||||||||||||||  |||||| ||| ||||||||||||||||||| |||||||| |||||| |||||||||    
T  12980207 gcaacccctagagaaatgttgtaatgcattatccaacaatatgttcactttaacatttgttagaccgattgatttagttgctcctttaaatat 12980299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 5376924 - 5377008
Alignment:
Q  96 tagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||||||||||||||||||| ||||  ||||||||||||||||||||||||| |||| |||||||| |||||| |||||||||    
T  5376924 tagagaaatgttgtaatgcattgtccaacaatatgctcattttaacatttgttaaaccgattgatttagttgctcctttaaatat 5377008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 96 - 180
Target Start/End: Complemental strand, 18826126 - 18826042
Alignment:
Q  96 tagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||| |||||||| ||| ||||||| ||||    
T  18826126 tagagaaatgttgtaatgcatcatccaataatatgctcactttaacatttgttagaccgattgatttagttgttcttttatatat 18826042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 3920377 - 3920461
Alignment:
Q  96 tagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||| || ||||| ||| || |||||||||    
T  3920377 tagagaaatgttgtaatgcattatcaagaaatacgctcattttaacatttgttagaccgattcatttagttgttcctttaaatat 3920461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 23328448 - 23328532
Alignment:
Q  96 tagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||| |||||||| ||  || |||||||||    
T  23328448 tagagaaatgttgtaatgcattatccagtaatatgctcactttagcatttattagaccgattgatttagttattcctttaaatat 23328532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 180
Target Start/End: Complemental strand, 26004775 - 26004691
Alignment:
Q  96 tagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||||||||||||||  ||||||||  |||||||||||||||||||||||||||||| |||||||| | |||| |||||||||    
T  26004775 tagagaaatgttgtaattaattatccaacaatatgctcattttaacatttgttagaccgattgatttagtcgctcctttaaatat 26004691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 26622782 - 26622874
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||||||||||||||||||||||||||||| || ||||||| ||  || ||||||||| ||||  ||||||||||||||| |||||||||    
T  26622782 gcaacccttagagaaatgttgtaatgcattatcaagcaatatgcgcacattgacatttgtttgaccaattgatttaattgctcctttaaatat 26622874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 16078844 - 16078936
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||| ||||||||||||||||| |||||||||  |||||| ||| |||||||||| |||||||| |||||||| || ||| |||||||||    
T  16078844 gcaacccctagagaaatgttgtaattcattatccaacaatatgttcactttaacattttttagaccgattgatttagtttctcctttaaatat 16078936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 37579093 - 37579185
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||| | ||||||||||||||| ||||||| || |||||||||| ||||||||||||||||  | |||||||| |||||| |||||||||    
T  37579093 gcaacccctggagaaatgttgtaatacattatctagcaatatgctcactttaacatttgttagatggattgatttagttgctcatttaaatat 37579185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 180
Target Start/End: Complemental strand, 27850576 - 27850496
Alignment:
Q  99 agaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||||| ||||||||||||||  ||||||||||||| ||||||||||||| || |||||||| |||||| |||||||||    
T  27850576 agaaatgttctaatgcattatccaacaatatgctcattt-aacatttgttagatcgattgatttagttgctcctttaaatat 27850496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 95 - 180
Target Start/End: Complemental strand, 5916321 - 5916236
Alignment:
Q  95 ttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||| ||||||| |||||||| ||| |||||||| |||| ||||||||||||||||||| |||||| | || ||| |||||||||    
T  5916321 ttagaaaaatgttataatgcatcatctagtaatatactcagtttaacatttgttagaccgattgattgatttactcctttaaatat 5916236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 24425249 - 24425303
Alignment:
Q  125 aatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||||||| |||||||||||||||||||||||||||| ||| || |||||||||    
T  24425249 aatatgctcactttaacatttgttagaccggttgatttatttg-tcctttaaatat 24425303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 43507280 - 43507355
Alignment:
Q  105 gttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||||| |||||||||  |||||||||| ||||| ||||||||||| |  ||||||| ||| ||||||||||||    
T  43507280 gttgtaatacattatccaacaatatgctcactttaaaatttgttagacggaatgatttagttgatcttttaaatat 43507355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 17120510 - 17120588
Alignment:
Q  102 aatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||||||||| | ||||||| ||| |||||  |||||||||| || |||||| |||||| ||||||| |||||||||    
T  17120510 aatgttgtaatgtactatccaggaatttgctccctttaacatttttttgaccggatgatttgattgctcatttaaatat 17120588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 180
Target Start/End: Complemental strand, 37196243 - 37196169
Alignment:
Q  106 ttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||| ||||||||| ||||| ||||| ||||||||||||||||| |  ||||||| ||| ||||||| ||||    
T  37196243 ttgtaatacattatccaataatacgctcactttaacatttgttagacggaatgatttagttgatcttttatatat 37196169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 180
Target Start/End: Complemental strand, 2630809 - 2630744
Alignment:
Q  115 attatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||||  |||||| ||| ||||||||||| ||||||| |||||||| |||||| |||||||||    
T  2630809 attatccaacaatatgttcactttaacatttgatagaccgattgatttagttgctcatttaaatat 2630744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 17851614 - 17851654
Alignment:
Q  17 tcctcgacgggttcgggtatccccttccccacattgaataa 57  Q
    |||||||||||||||||||||||| ||||| ||||||||||    
T  17851614 tcctcgacgggttcgggtatccccgtccccgcattgaataa 17851654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 180
Target Start/End: Complemental strand, 44986157 - 44986069
Alignment:
Q  92 cccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||| |||| || |||||||| |||||||||  |||||| ||| ||||||||||||||||| |  ||||||| ||| || |||||||||    
T  44986157 ccctaagagcaacgttgtaatacattatccaacaatatgttcactttaacatttgttagacggaatgatttagttgatcctttaaatat 44986069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 46127402 - 46127350
Alignment:
Q  128 atgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||| ||||||||||||||||||| |||||||| ||| || |||||||||    
T  46127402 atgctcactttaacatttgttagaccgattgatttagttgttcctttaaatat 46127350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 3227789 - 3227714
Alignment:
Q  105 gttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||||| |||||||||  |||||||||| || |||||||||||||| |  ||||||| ||| || |||||||||    
T  3227789 gttgtaatacattatccaacaatatgctcacttcaacatttgttagacggaatgatttagttgatcctttaaatat 3227714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 3274899 - 3274848
Alignment:
Q  102 aatgttgtaatgcattatccagtaatatgctcattttaacatttgttagacc 153  Q
    |||||||||| || ||||| | |||||| |||||||||||||||||||||||    
T  3274899 aatgttgtaacgcgttatctaataatatactcattttaacatttgttagacc 3274848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 145
Target Start/End: Original strand, 26874210 - 26874253
Alignment:
Q  102 aatgttgtaatgcattatccagtaatatgctcattttaacattt 145  Q
    ||||||||||||||||||||||||||||| ||  ||||||||||    
T  26874210 aatgttgtaatgcattatccagtaatatgttcgctttaacattt 26874253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 27454713 - 27454678
Alignment:
Q  102 aatgttgtaatgcattatccagtaatatgctcattt 137  Q
    |||||| |||||||||||||||||||||||||||||    
T  27454713 aatgttataatgcattatccagtaatatgctcattt 27454678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 152
Target Start/End: Original strand, 35074308 - 35074363
Alignment:
Q  97 agagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagac 152  Q
    |||| |||||||||||||||||||||  |||| ||||| ||| |||||||||||||    
T  35074308 agagcaatgttgtaatgcattatccaacaataagctcactttcacatttgttagac 35074363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 38140039 - 38139964
Alignment:
Q  105 gttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||||| |||||||||  |||| ||||| ||||||||||||||||| |  ||||||| ||| || |||||||||    
T  38140039 gttgtaatacattatccaacaatacgctcactttaacatttgttagacggaatgatttagttgatcctttaaatat 38139964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 152
Target Start/End: Original strand, 39316842 - 39316889
Alignment:
Q  105 gttgtaatgcattatccagtaatatgctcattttaacatttgttagac 152  Q
    |||||||| |||||||||  |||||||||| |||||||||||||||||    
T  39316842 gttgtaatacattatccaccaatatgctcactttaacatttgttagac 39316889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 152
Target Start/End: Complemental strand, 41741695 - 41741648
Alignment:
Q  105 gttgtaatgcattatccagtaatatgctcattttaacatttgttagac 152  Q
    |||||||| |||||||||  |||||||||| |||||||||||||||||    
T  41741695 gttgtaatacattatccaacaatatgctcactttaacatttgttagac 41741648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 90431 - 90515
Alignment:
Q  96 tagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||||||||||||||||||||||||| ||||| |||| ||||| ||||||||||||| |||||||| |||||| |||||||||    
T  90431 tagagaaatgttgtaatgcattatccagcaatatactcactttaatatttgttagaccgattgatttatttgctcctttaaatat 90515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 12678355 - 12678264
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||| |||||| ||| |||||||| |||||||| |||||| |||||||||    
T  12678355 gcaacccctagagaaatgttgtaatgcattatccagcaatatgctcactttaac-tttattagaccgattgatttagttgctcctttaaatat 12678264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 14411095 - 14411003
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||| || ||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||| |||||||| || ||| |||||||||    
T  14411095 gcaacccctaaagaaatgttgtaatgtattatccagcaatatgctcactttaacatttgttagaccgattgatttagtttctcctttaaatat 14411003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 89 - 180
Target Start/End: Original strand, 14032383 - 14032474
Alignment:
Q  89 caacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||| ||||||||| |||||||| ||||||||  |||||||||| ||||||||||||||||||| |||||||| |||||| |||||||||    
T  14032383 caacccctagagaaattttgtaatgaattatccaacaatatgctcactttaacatttgttagaccgattgatttagttgctcctttaaatat 14032474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 14505920 - 14506004
Alignment:
Q  96 tagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||||||||||||||||||||||||  |||||||||| ||||||||||||||||| | |||||||| |||||| ||| |||||    
T  14505920 tagagaaatgttgtaatgcattatccaacaatatgctcactttaacatttgttagactgattgatttagttgctcctttcaatat 14506004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 7394136 - 7394057
Alignment:
Q  101 aaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||||||||||||||||||  |||||| ||| ||||||||||||||||||| |||||||| ||| || |||||||||    
T  7394136 aaatgttgtaatgcattatccaacaatatgttcactttaacatttgttagaccgattgatttagttgttcctttaaatat 7394057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 151
Target Start/End: Original strand, 11762271 - 11762334
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttaga 151  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||||||  |||||||    
T  11762271 gcaacccttagagaaatgttgtaatgcattatccagcaatatgcttattttaacaaatgttaga 11762334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 24603116 - 24603026
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||||| |||||||| |||||||||| ||| || |||||||||| ||||||||||||||||||| |||||||| ||| || |||||||||    
T  24603116 gcaaccctt-gagaaatgctgtaatgcat-atcgagcaatatgctcactttaacatttgttagaccgattgatttagttgttcctttaaatat 24603026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 182
Target Start/End: Original strand, 14245081 - 14245167
Alignment:
Q  96 tagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatatta 182  Q
    ||||||||| ||||||| ||||||| || |||||| ||| |||||||||| ||||||||  ||||||| | |||| |||||||||||    
T  14245081 tagagaaatattgtaatacattatctagcaatatgttcactttaacatttattagaccgaatgatttagtcgctcctttaaatatta 14245167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 178
Target Start/End: Original strand, 30816084 - 30816173
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaat 178  Q
    ||||||| ||||||||| ||||| || ||||||||  ||||||  || ||||||||||||||||||| ||||||||  ||||| |||||||    
T  30816084 gcaacccctagagaaatattgta-tgaattatccaacaatatgtacactttaacatttgttagaccgattgatttaggtgctcctttaaat 30816173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 32532417 - 32532481
Alignment:
Q  116 ttatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||| ||||||||||| ||||||||||||||||| |  ||||||| ||| || |||||||||    
T  32532417 ttatccaataatatgctcactttaacatttgttagacggaatgatttagttggtcctttaaatat 32532481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 56
Target Start/End: Complemental strand, 5863712 - 5863677
Alignment:
Q  21 cgacgggttcgggtatccccttccccacattgaata 56  Q
    |||||||||||||||||||| |||||||||||||||    
T  5863712 cgacgggttcgggtatccccgtccccacattgaata 5863677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 29755593 - 29755501
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||| || |||||||| || ||  |||||||||    
T  29755593 gcaacccttagagaaatgttgtaatgcattatccaacaatatactcattttaacatttgttagatcgattgatttagttacttctttaaatat 29755501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 37348963 - 37349047
Alignment:
Q  96 tagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||| || ||||| |||||| |||||||||    
T  37348963 tagagaaatgttgtaatgcattatccagcaatatgctcactttaagatttgttagaccgattaatttagttgctcctttaaatat 37349047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 89 - 180
Target Start/End: Original strand, 19534288 - 19534379
Alignment:
Q  89 caacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||||||||||||||||||||| ||||||| |  |||||||||| ||||||||||||||||||| |||||||| |||||| |||| ||||    
T  19534288 caacccttagagaaatgttgtaatccattatctaacaatatgctcactttaacatttgttagaccgattgatttagttgctcctttagatat 19534379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 425663 - 425747
Alignment:
Q  96 tagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||||||||||||| |||||||||| |||||| ||| ||||| ||||||||||||| |||||||| ||| ||||||||||||    
T  425663 tagagaaatgttgtaatacattatccagcaatatgttcactttaagatttgttagaccgattgatttagttgttcttttaaatat 425747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 88 - 179
Target Start/End: Original strand, 37107243 - 37107334
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaata 179  Q
    ||||||| || | ||||||||||||||||||||||| |||||||||||||||| |||||| |||||| |||||||| |||||  ||||||||    
T  37107243 gcaacccctataaaaatgttgtaatgcattatccagcaatatgctcattttaatatttgtcagaccgattgatttagttgcttctttaaata 37107334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 180
Target Start/End: Complemental strand, 7985384 - 7985293
Alignment:
Q  89 caacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||| |||| ||||||||||||||||||||||  |||||  ||| ||||||||||||||||||  |||||||| |||||| |||||||||    
T  7985384 caacccatagataaatgttgtaatgcattatccatcaatattttcactttaacatttgttagaccaattgatttagttgctcatttaaatat 7985293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 1724573 - 1724481
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||| ||||||||| ||  |||||||||||||  |||||| ||| ||||||||||||||||||| || ||||| |||||| |||||||||    
T  1724573 gcaacccctagagaaatattaaaatgcattatccaacaatatgttcactttaacatttgttagaccgatttatttagttgctcctttaaatat 1724481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 12825724 - 12825632
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||| ||||||||||||||||||||||||| |  ||||| |||| ||||| |||| |||||||  |||||||| |||||| |||||||||    
T  12825724 gcaacccctagagaaatgttgtaatgcattatctaacaatatcctcactttaatatttattagaccaattgatttagttgctcctttaaatat 12825632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 178
Target Start/End: Complemental strand, 43228693 - 43228617
Alignment:
Q  102 aatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaat 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||  | ||||||  |||||| |||||||    
T  43228693 aatgttgtaatgcattatccagtaatatgctcattttaacatttcctagacgtgatgatttggttgctcctttaaat 43228617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 169
Target Start/End: Original strand, 9230115 - 9230197
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctca-ttttaacatttgttagaccggttgatttaattgct 169  Q
    ||||||| |||||||||| ||||||| ||||||||  |||||| ||| |||||||||||||||||||| |||||||| |||||    
T  9230115 gcaacccctagagaaatgatgtaatgtattatccaacaatatgttcacttttaacatttgttagaccgattgatttagttgct 9230197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 26564671 - 26564755
Alignment:
Q  96 tagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||||| |||||||||||||||||  |||||| ||| ||||||||||||| ||||| |||||||| ||| ||  ||||||||    
T  26564671 tagagaaatattgtaatgcattatccaacaatatgttcactttaacatttgtttgaccgattgatttagttgttccgttaaatat 26564755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 163
Target Start/End: Original strand, 39188347 - 39188422
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgattta 163  Q
    ||||||| ||||||||||||||||||||| | |||  |||||| ||| |||||||||||||||| || ||||||||    
T  39188347 gcaacccatagagaaatgttgtaatgcataacccaacaatatgttcactttaacatttgttagaacgattgattta 39188422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 97 - 182
Target Start/End: Complemental strand, 28695397 - 28695311
Alignment:
Q  97 agagaaatgttgtaatgcattatccagtaatatgctcatttt-aacatttgttagaccggttgatttaattgctcttttaaatatta 182  Q
    |||| ||||||| |||||||||||||  |||| ||||||||| ||||||||||| ||||  ||||||| |||||| |||||||||||    
T  28695397 agagcaatgttgcaatgcattatccaacaatacgctcatttttaacatttgttaaaccgaatgatttagttgctcctttaaatatta 28695311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 106 - 182
Target Start/End: Complemental strand, 13770700 - 13770624
Alignment:
Q  106 ttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatatta 182  Q
    |||||||| ||||||||  |||||| ||| ||||||||||||| ||||| |||||||| |||||| || ||||||||    
T  13770700 ttgtaatgtattatccaacaatatgttcactttaacatttgtttgaccgattgatttagttgctccttcaaatatta 13770624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 31752304 - 31752379
Alignment:
Q  105 gttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||||  |||||||||| |||||||||| ||||||||||| ||||| |  ||||||| ||| ||||||||||||    
T  31752304 gttgtaaaacattatccagcaatatgctcactttaacatttgatagacggaatgatttagttgatcttttaaatat 31752379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 152
Target Start/End: Original strand, 39046801 - 39046848
Alignment:
Q  105 gttgtaatgcattatccagtaatatgctcattttaacatttgttagac 152  Q
    |||||||| |||||||||  ||||||||||||||||||||||||||||    
T  39046801 gttgtaatacattatccaacaatatgctcattttaacatttgttagac 39046848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 180
Target Start/End: Original strand, 42299631 - 42299714
Alignment:
Q  97 agagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||| ||||||||||| || ||||||  |||||| ||| ||||||||||||||||  || ||||||| |||||| |||||||||    
T  42299631 agagcaatgttgtaatacaatatccaacaatatgttcactttaacatttgttagagaggatgatttagttgctcatttaaatat 42299714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 145
Target Start/End: Original strand, 52602945 - 52602988
Alignment:
Q  102 aatgttgtaatgcattatccagtaatatgctcattttaacattt 145  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  52602945 aatgttgtaatgcattatccagcaatatgctcactttaacattt 52602988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 180
Target Start/End: Complemental strand, 6482296 - 6482207
Alignment:
Q  90 aacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||| ||||||||| |||||||  |||||| |  |||||| ||| ||||||||||||||||||| |||||||| || ||| |||||||||    
T  6482296 aacccctagagaaattttgtaataaattatcaac-aatatgttcactttaacatttgttagaccgattgatttagtttctcctttaaatat 6482207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 13015627 - 13015570
Alignment:
Q  97 agagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccg 154  Q
    |||| ||||||||||| ||||||||| ||||||| ||| |||||||| ||||||||||    
T  13015627 agagcaatgttgtaatacattatccaataatatgttcactttaacatctgttagaccg 13015570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 44317278 - 44317334
Alignment:
Q  1 ttgaaccccatccttatcctcgacgggttcgggtatccccttccccacattgaataa 57  Q
    ||||| |||||||  |||| |||||||||||||||||||| ||||| ||||||||||    
T  44317278 ttgaatcccatccccatccccgacgggttcgggtatccccgtccccgcattgaataa 44317334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 145
Target Start/End: Complemental strand, 30021649 - 30021606
Alignment:
Q  102 aatgttgtaatgcattatccagtaatatgctcattttaacattt 145  Q
    |||||||||||||||||| || ||||||||| ||||||||||||    
T  30021649 aatgttgtaatgcattattcaataatatgcttattttaacattt 30021606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 42774609 - 42774684
Alignment:
Q  105 gttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||||| |||||||||  |||||| ||||||||||||||||||||  |  ||||||| ||| || |||||||||    
T  42774609 gttgtaatacattatccaacaatatgttcattttaacatttgttagaaggaatgatttagttgatcctttaaatat 42774684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 145
Target Start/End: Original strand, 50684330 - 50684375
Alignment:
Q  100 gaaatgttgtaatgcattatccagtaatatgctcattttaacattt 145  Q
    ||||| ||||||||||||||||| |||||| || ||||||||||||    
T  50684330 gaaattttgtaatgcattatccaataatattcttattttaacattt 50684375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 15987570 - 15987534
Alignment:
Q  21 cgacgggttcgggtatccccttccccacattgaataa 57  Q
    |||||||||||||||||||  ||||||||||||||||    
T  15987570 cgacgggttcgggtatccctgtccccacattgaataa 15987534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 14614 - 14693
Alignment:
Q  101 aaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||| |||| |||||||| |||||| |||||||||    
T  14614 aaatgttgtaatgcattatccagcaatatgctcactttaacatttgttaaaccgattgatttagttgctcctttaaatat 14693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 14407 - 14315
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||| ||||||||| |||||||| ||||||||  |||||| ||| ||||||||||||||||||| |||||||||||| || |||||||||    
T  14407 gcaacccctagagaaatattgtaatgaattatccaacaatatgttcactttaacatttgttagaccgattgatttaattgttcctttaaatat 14315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 197589 - 197497
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||| |||||||| ||| ||||||||||||||| || ||||||| ||||| ||||||||||||| |||||||| |||||| |||||||||    
T  197589 gcaacccctagagaaacgttataatgcattatccagcaaaatgctcactttaatatttgttagaccgattgatttagttgctcctttaaatat 197497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 1012443 - 1012535
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||| ||||||||| |||||||| ||||||||  |||||| ||| ||||||||||||||||||| |||||||| |||||| |||||||||    
T  1012443 gcaacccctagagaaatattgtaatggattatccaacaatatgttcactttaacatttgttagaccgattgatttagttgctcctttaaatat 1012535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 180
Target Start/End: Original strand, 34139274 - 34139365
Alignment:
Q  89 caacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||| |||||||||||| ||||||||||||||  |||||| ||| ||||||||||||||||||| |||||||  || ||| |||||||||    
T  34139274 caacccctagagaaatgttataatgcattatccaacaatatgttcactttaacatttgttagaccgattgatttgtttactcctttaaatat 34139365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 88 - 178
Target Start/End: Complemental strand, 36132178 - 36132088
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaat 178  Q
    ||||||| |||| |||| ||||||| ||| |||||| |||||||||||||||||||||||| ||||| || |||||||||||  |||||||    
T  36132178 gcaacccctagaaaaatattgtaatacatcatccagcaatatgctcattttaacatttgtttgaccgattaatttaattgcttctttaaat 36132088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 24568773 - 24568857
Alignment:
Q  96 tagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||||| || ||||||||||||||  |||||| ||| ||||||||||||||||||| || ||||| |||||| |||||||||    
T  24568773 tagagaaatattctaatgcattatccaacaatatgttcactttaacatttgttagaccgatttatttagttgctcctttaaatat 24568857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 34021304 - 34021396
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||| |||||||||||||||||||| ||||| | ||||||||||| ||||||||||||||||    |||||||  |||||| |||||||||    
T  34021304 gcaacctttagagaaatgttgtaatgcgttatctaataatatgctcactttaacatttgttagattaattgatttcgttgctcctttaaatat 34021396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 180
Target Start/End: Original strand, 20399435 - 20399509
Alignment:
Q  106 ttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||||||||||||||| || ||||||| ||||||||||||||||||| |||||||  ||| || |||||||||    
T  20399435 ttgtaatgcattatccagcaagatgctcactttaacatttgttagaccgattgatttggttggtcctttaaatat 20399509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 180
Target Start/End: Original strand, 35215332 - 35215422
Alignment:
Q  90 aacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||| || ||| |||||||||||||||||| |  |||||| ||| ||||||||||||||||||| |||||||| ||||||  ||||||||    
T  35215332 aacccctaaagagatgttgtaatgcattatctaacaatatgttcactttaacatttgttagaccgattgatttagttgctccattaaatat 35215422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 17469089 - 17469173
Alignment:
Q  96 tagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||||| |||||||||||||||||  |||||| ||| ||||| |||| |||||||  |||||||| || ||| |||||||||    
T  17469089 tagagaaatattgtaatgcattatccaacaatatgttcactttaaaattttttagacccattgatttagtttctcctttaaatat 17469173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 180
Target Start/End: Original strand, 45235899 - 45235982
Alignment:
Q  97 agagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||| ||||||||||| |||||||||  |||||| ||| ||||||||||||||||| |  ||||||| ||| || |||||||||    
T  45235899 agagcaatgttgtaatacattatccaacaatatgttcactttaacatttgttagacggaatgatttagttgatcctttaaatat 45235982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 39445813 - 39445751
Alignment:
Q  105 gttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattg 167  Q
    |||||||| |||||||||  |||||||||| ||||||||||||||||| |  |||||||||||    
T  39445813 gttgtaatacattatccaacaatatgctcactttaacatttgttagacggaatgatttaattg 39445751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 29089544 - 29089627
Alignment:
Q  96 tagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||||| |||||||||||||||||  |||||| | | ||||| ||||||||||||  || ||||| |||||| |||||||||    
T  29089544 tagagaaatattgtaatgcattatccaacaatatgtttactttaa-atttgttagacccattaatttagttgctcctttaaatat 29089627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 27932255 - 27932330
Alignment:
Q  105 gttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||||| |||||||||  ||| |||||| |||||||||||||||||    ||||||||||| || |||||||||    
T  27932255 gttgtaatacattatccaccaatgtgctcactttaacatttgttagacgtaatgatttaattgatcctttaaatat 27932330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 180
Target Start/End: Complemental strand, 40248592 - 40248518
Alignment:
Q  106 ttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||| |||||||||  ||||| |||| ||||||||||||||||| |  ||||||| ||| || |||||||||    
T  40248592 ttgtaatacattatccaacaatattctcactttaacatttgttagactgaatgatttagttgatcctttaaatat 40248518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 138
Target Start/End: Original strand, 14186166 - 14186207
Alignment:
Q  97 agagaaatgttgtaatgcattatccagtaatatgctcatttt 138  Q
    |||||||||||| |||||||||||||  ||||||||||||||    
T  14186166 agagaaatgttgcaatgcattatccaacaatatgctcatttt 14186207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 178
Target Start/End: Complemental strand, 11255249 - 11255177
Alignment:
Q  106 ttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaat 178  Q
    ||||||| |||||||||  |||||| ||| ||||||||||||||||| |  ||||||| ||| || |||||||    
T  11255249 ttgtaatacattatccaacaatatgttcactttaacatttgttagacggaatgatttagttgatcctttaaat 11255177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 43113888 - 43113796
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||| | || |||| |||||||||| ||||||  | |||  ||| |||||||||||||| |||| |||||||| |||||| || ||||||    
T  43113888 gcaacccctcgaaaaatattgtaatgcaatatccaacactatattcactttaacatttgttataccgattgatttagttgctccttcaaatat 43113796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 33219 - 33311
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||| ||||||||| |||||||||||||||||  |||||| | | ||||||| ||||||||||| |||||||| ||| || |||||||||    
T  33219 gcaacccgtagagaaatattgtaatgcattatccaacaatatgtttactttaacaattgttagaccgattgatttagttgttcctttaaatat 33311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 169
Target Start/End: Original strand, 35981 - 36063
Alignment:
Q  88 gcaacccttagagaaatgttgtaatgcattatccagtaatatgctca-ttttaacatttgttagaccggttgatttaattgct 169  Q
    ||||||| |||||||||| ||||||| ||||||||  |||||| ||| |||||||||||||||||||| |||||||| |||||    
T  35981 gcaacccctagagaaatgatgtaatgtattatccaacaatatgttcacttttaacatttgttagaccgattgatttagttgct 36063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 180
Target Start/End: Original strand, 33419 - 33501
Alignment:
Q  98 gagaaatgttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    ||||||| |||||||||||||||||  |||||| ||| ||||| |||||||| ||||  |||||||||||||  |||||||||    
T  33419 gagaaatattgtaatgcattatccaacaatatgttcactttaatatttgttacaccgactgatttaattgcttctttaaatat 33501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 32775 - 32713
Alignment:
Q  105 gttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattg 167  Q
    |||||||| |||||||||  |||||||||| ||||||||||||||||| |  |||||||||||    
T  32775 gttgtaatacattatccaacaatatgctcactttaacatttgttagacggaatgatttaattg 32713  T

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Target: scaffold0189 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 4099 - 4174
Alignment:
Q  105 gttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaatat 180  Q
    |||||||| |||||||||  |||||| ||| ||||||||||||||||  |  ||||||| |||||| |||||||||    
T  4099 gttgtaatacattatccaacaatatgttcactttaacatttgttagatggaatgatttagttgctcctttaaatat 4174  T

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Target: scaffold0113 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 41597 - 41559
Alignment:
Q  107 tgtaatgcattatccagtaatatgctcattttaacattt 145  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  41597 tgtaatgcattatcaagtaatatgttcattttaacattt 41559  T

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Target: scaffold0519 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 178
Target Start/End: Original strand, 10144 - 10216
Alignment:
Q  106 ttgtaatgcattatccagtaatatgctcattttaacatttgttagaccggttgatttaattgctcttttaaat 178  Q
    ||||||| |||||||||  |||||| ||| ||||||||||||||||| |  ||||||| ||| || |||||||    
T  10144 ttgtaatacattatccaacaatatgttcactttaacatttgttagacggaatgatttagttgatcctttaaat 10216  T

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