View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9570_low_9 (Length: 295)
Name: NF9570_low_9
Description: NF9570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9570_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 2766063 - 2766333
Alignment:
| Q |
18 |
ttaatgtgttgatggacagggagaagaaagtgataacatttgagagcttaaagaaaaactctgcattgcttggattggaaggtatgaacgacgatgaaat |
117 |
Q |
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| T |
2766063 |
ttaatgtgttgatggacagggagaagaaagtgataacatttgagagcttaaagaaaaactctgcattgcttggattggaaggtatgaacgacgatgaaat |
2766162 |
T |
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| Q |
118 |
tacttgcatgctaagagaaggtgatattgatggggatggagctcttaatgagatggagttttgcaccctcatgtttaggttgagtcctgctttgatgagt |
217 |
Q |
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| T |
2766163 |
tacttgcatgctaagagaaggtgatattgatggggatggagctcttaatgagatggagttttgcaccctcatgtttaggttgagtcctgctttgatgagt |
2766262 |
T |
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| Q |
218 |
gactctaagcaacttttggaagaagctattttcactggccattgatgttttttctccttttgttgatgtcc |
288 |
Q |
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| T |
2766263 |
gactctaagcaacttttggaagaagctattttcactggccattgatgttttttctccttttgttaatgtcc |
2766333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 204
Target Start/End: Complemental strand, 34144104 - 34144024
Alignment:
| Q |
124 |
catgctaagagaaggtgatattgatggggatggagctcttaatgagatggagttttgcaccctcatgtttaggttgagtcc |
204 |
Q |
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| T |
34144104 |
catgctaatggaaggtgatttggatggagatggtgctttaaatcaaatggagttttgcattctcatgtttaggttgagtcc |
34144024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 204
Target Start/End: Complemental strand, 34115010 - 34114930
Alignment:
| Q |
124 |
catgctaagagaaggtgatattgatggggatggagctcttaatgagatggagttttgcaccctcatgtttaggttgagtcc |
204 |
Q |
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| T |
34115010 |
catgctaatggagggtgatttggatggagatggtgctttaaatcaaatggagttttgcattctcatgtttaggttgagtcc |
34114930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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