View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9571_low_1 (Length: 455)
Name: NF9571_low_1
Description: NF9571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9571_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 198 - 441
Target Start/End: Complemental strand, 4963756 - 4963509
Alignment:
| Q |
198 |
acttgagggaacttgcttcggtgtggagcctggataccttcacaacacttctatcaaaatatacccagacatcatcccgactgcccggtaatcttaactt |
297 |
Q |
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| T |
4963756 |
acttgagggaacttgcttcggcgtggagcctggataccttcacaacacttctatcaaaatatacccagacatcatcccgactgcccggtaatcttaactt |
4963657 |
T |
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| Q |
298 |
gatcatttttacaatgagattttttaagtcg----ttaaagttttgcctttggctaagaaaattgagtttgtaaatgtttttaacgatttaatttaaagc |
393 |
Q |
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| T |
4963656 |
gatcatttttacaatgggattttttaagtcgttaattaaagttttgcctttggctaagaaaattgagtttgaaaatgtttttaacgatttaatttaaagc |
4963557 |
T |
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| Q |
394 |
gcatgaaaatatctaccttgagttgtccttactgatgaatctgtgctt |
441 |
Q |
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| T |
4963556 |
gcatgaaaatatctaccttgagttgtcctggctgatgaatctgtgctt |
4963509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 65 - 169
Target Start/End: Complemental strand, 4963864 - 4963756
Alignment:
| Q |
65 |
ttagtgtttctgtaagttcttagatcattaagttattat----ctgttaattttggcatgttgatctcaagtttcttactgtgatttcctttgcattatg |
160 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| | | ||||||||||||| |
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| T |
4963864 |
ttagtgtttctgtaagttcttagatcattaagttattaattagctgttaattttggcatgttgctctcaagtttcttactgttaatccctttgcattatg |
4963765 |
T |
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| Q |
161 |
aattagaaa |
169 |
Q |
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| T |
4963764 |
aattagaaa |
4963756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 4963900 - 4963871
Alignment:
| Q |
18 |
atgaggctcgatgaggaggttatcatgaac |
47 |
Q |
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| T |
4963900 |
atgaggctcgatgaggaggttatcatgaac |
4963871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 128 - 288
Target Start/End: Original strand, 8302316 - 8302475
Alignment:
| Q |
128 |
caagtttcttactgtgatttcctttgcattatgaattagaaagtcgaaaacataatgagtgtaattagtgacttgagggaacttgcttcggtgtggagcc |
227 |
Q |
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||||||||||||| | |||||||| |||| || || ||||||| ||||||| | |||||||| |||| |||||||||||||||||||| | | ||||| |
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| T |
8302316 |
caagtttcttactctaatttccttgacattctgtatcagaaagttgaaaacagagtgagtgtacttagcgacttgagggaacttgcttcagcggagagcc |
8302415 |
T |
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| Q |
228 |
tggataccttcacaacacttctatcaaaatatacccagacatcatcccgactgcccggtaa |
288 |
Q |
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| T |
8302416 |
tggatacctttac-actcatctatacaaatatactcgaacatcaacctgactgcccggtaa |
8302475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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