View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9571_low_11 (Length: 305)
Name: NF9571_low_11
Description: NF9571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9571_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 52511410 - 52511148
Alignment:
| Q |
1 |
caccttgatggagtcaaaggtttctcaatctcaaacggcgttgaagaaatcacgatcttcatcagaatcacgcccttcatgcccaccctttaaggtattt |
100 |
Q |
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| T |
52511410 |
caccttgatggagtcaaaggtttctcaatctcaaacggcgttgaagaaatcacgatcttcatcagaatcacgtccttcatgcccaccctttaaggtattt |
52511311 |
T |
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| Q |
101 |
taagaagaaacaatatctgatataatatcgtgcaattaatctaaattattatatatccaaaattcannnnnnnnataaggggatatattnnnnnnnttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| | |||| |
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| T |
52511310 |
taagaagaaacaatatctgatataatatcgtgcaattaatctgaattattatatatccaaaattcattttttt--taaggggatata-tccaaaatttta |
52511214 |
T |
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| Q |
201 |
aatattaagtgtcatgtttgtaacattatttgtcattttagttattttttctcattcaaggtattc |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52511213 |
aatattaagtgtcatgtttgtaacattatttgtcattttagttattttttctcattcaaggtattc |
52511148 |
T |
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