View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9571_low_14 (Length: 295)

Name: NF9571_low_14
Description: NF9571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9571_low_14
NF9571_low_14
[»] chr8 (6 HSPs)
chr8 (22-282)||(44312386-44312646)
chr8 (22-241)||(43896153-43896372)
chr8 (22-247)||(44306607-44306832)
chr8 (24-242)||(44301501-44301719)
chr8 (20-66)||(43895622-43895668)
chr8 (20-66)||(44306046-44306092)
[»] chr3 (1 HSPs)
chr3 (22-243)||(4084265-4084492)
[»] chr4 (1 HSPs)
chr4 (22-243)||(18701757-18701982)
[»] chr6 (2 HSPs)
chr6 (22-243)||(8158982-8159224)
chr6 (135-200)||(409886-409951)
[»] chr5 (1 HSPs)
chr5 (83-243)||(35856724-35856884)
[»] chr7 (1 HSPs)
chr7 (22-62)||(15040308-15040348)
[»] chr2 (2 HSPs)
chr2 (175-231)||(10541388-10541444)
chr2 (175-231)||(10846409-10846465)


Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 22 - 282
Target Start/End: Original strand, 44312386 - 44312646
Alignment:
Q  22 gtcattatatatctaacagacccatcagtaaaagtatctccagatctaagaatagcaccaaatacaaaaacaatttctccagcatgagcttcatcaactt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44312386 gtcattatatatctaacagacccatcagtaaaagtatctccagatctaagaatagcaccaaacacaaaaacaatttctccagcatgagcttcatcaactt 44312485  T
Q  122 ccttaatcatatcataatgtctcttacccaaacaaggaatcttaatcttctcaccagtgttaacatttgtaataaaatcacccttcttaataacaccctg 221  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  44312486 ccttaatcttaccataatgtctcttacccaaacaaggaatcttaatcttcttaccagtgttaacgtttgtaataaaatcacccttcttaataacaccctg 44312585  T
Q  222 atagattcttagataagttaataagtacctaatcctatacatatttgtgaaaacctttgct 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44312586 atagattcttagataagttaataagtacctaatcctatacatatttgtgaaaacctttgct 44312646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 43896153 - 43896372
Alignment:
Q  22 gtcattatatatctaacagacccatcagtaaaagtatctccagatctaagaatagcaccaaatacaaaaacaatttctccagcatgagcttcatcaactt 121  Q
    |||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||| | || |||| || ||| |||||||||||||||||||||||||    
T  43896153 gtcattgtatatctaacagacccatcagtgaaagtatctccagatttaagaatagcatctaacacaataataatctctccagcatgagcttcatcaactt 43896252  T
Q  122 ccttaatcatatcataatgtctcttacccaaacaaggaatcttaatcttctcaccagtgttaacatttgtaataaaatcacccttcttaataacaccctg 221  Q
    ||| |||| |||||| ||||||||||  ||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43896253 cctcaatcttatcatcatgtctcttaaacaaacgaggaatctgaatcttcttaccagtgttaacatttgtaataaaatcacccttcttaataacaccctg 43896352  T
Q  222 atagattcttagataagtta 241  Q
    ||||||||||||||||||||    
T  43896353 atagattcttagataagtta 43896372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 22 - 247
Target Start/End: Original strand, 44306607 - 44306832
Alignment:
Q  22 gtcattatatatctaacagacccatcagtaaaagtatctccagatctaagaatagcaccaaatacaaaaacaatttctccagcatgagcttcatcaactt 121  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||| |||| | || |  | |||||||||||||||||||||||||||||| |    
T  44306607 gtcattgtatatctaacagacccatcagtaaaagtatctccagatttaagaagagcatcgaacaacataacaatttctccagcatgagcttcatcaacat 44306706  T
Q  122 ccttaatcatatcataatgtctcttacccaaacaaggaatcttaatcttctcaccagtgttaacatttgtaataaaatcacccttcttaataacaccctg 221  Q
     || ||||  ||||| ||||||||||| |||   | |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44306707 actcaatctcatcatcatgtctcttacacaaggtaagaatctgaatcttctcaccagtgttaacatttgtaataaaatcatccttcttaataacaccctg 44306806  T
Q  222 atagattcttagataagttaataagt 247  Q
    ||||||||||||||||||||||||||    
T  44306807 atagattcttagataagttaataagt 44306832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 24 - 242
Target Start/End: Original strand, 44301501 - 44301719
Alignment:
Q  24 cattatatatctaacagacccatcagtaaaagtatctccagatctaagaatagcaccaaatacaaaaacaatttctccagcatgagcttcatcaacttcc 123  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||| |  | | || |||| |||||||||||| |||||||||||||||||   |    
T  44301501 cattgtatatctaacagacccatcagtaaaagtatctccagatttaagaacaatagctaacacaataacaatttctccggcatgagcttcatcaacaaac 44301600  T
Q  124 ttaatcatatcataatgtctcttacccaaacaaggaatcttaatcttctcaccagtgttaacatttgtaataaaatcacccttcttaataacaccctgat 223  Q
    | ||||| ||||| ||||||||||  ||| | |  ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  44301601 tcaatcacatcatcatgtctcttagacaagctataaatctgaatcttctcaccagtgttaacatttgtaataaaatcacccttcttgataacaccctgat 44301700  T
Q  224 agattcttagataagttaa 242  Q
    ||||||||||| |||||||    
T  44301701 agattcttagacaagttaa 44301719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 43895622 - 43895668
Alignment:
Q  20 aggtcattatatatctaacagacccatcagtaaaagtatctccagat 66  Q
    ||||||||  |||||||||||||||||||| ||||||||||||||||    
T  43895622 aggtcattgaatatctaacagacccatcagcaaaagtatctccagat 43895668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 44306046 - 44306092
Alignment:
Q  20 aggtcattatatatctaacagacccatcagtaaaagtatctccagat 66  Q
    ||||||||  ||||||||| |||||||||| ||||||||||||||||    
T  44306046 aggtcattgaatatctaacggacccatcagcaaaagtatctccagat 44306092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 22 - 243
Target Start/End: Original strand, 4084265 - 4084492
Alignment:
Q  22 gtcattatatatctaacagacccatcagtaaaagtatctccagatctaagaatagcaccaaat------acaaaaacaatttctccagcatgagcttcat 115  Q
    |||||| ||||||||| |||||| ||||||||||||||||||||| ||||||||||| ||||       |||| ||||| ||||||||||||||||||||    
T  4084265 gtcattgtatatctaatagacccgtcagtaaaagtatctccagatttaagaatagcatcaaactttaacacaataacaagttctccagcatgagcttcat 4084364  T
Q  116 caacttccttaatcatatcataatgtctcttacccaaacaaggaatcttaatcttctcaccagtgttaacatttgtaataaaatcacccttcttaataac 215  Q
    ||||| |||||||| ||| || ||||||||||  ||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||    
T  4084365 caactgccttaatcgtattatcatgtctcttaaacaaacgaggaatcttaatcttcttaccggtgttaacatttgtaataaaatcacccttcttgataac 4084464  T
Q  216 accctgatagattcttagataagttaat 243  Q
    ||||||||||||||||||||||||||||    
T  4084465 accctgatagattcttagataagttaat 4084492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 22 - 243
Target Start/End: Original strand, 18701757 - 18701982
Alignment:
Q  22 gtcattatatatctaacagacccat---cagtaaaagtatctccagatctaagaatagcaccaaatacaaaaacaatttctccagcatgagcttcatcaa 118  Q
    |||||| ||||||||||||||||||   | ||||||||||||||||||  ||||  |||| |||| ||||||||||||||||||||||||||||||||||    
T  18701757 gtcattgtatatctaacagacccattggcggtaaaagtatctccagattcaagatgagcatcaaaaacaaaaacaatttctccagcatgagcttcatcaa 18701856  T
Q  119 cttccttaatcatatcataat-gtctcttacccaaacaaggaatcttaatcttctcaccagtgttaacatttgtaataaaatcacccttcttaataacac 217  Q
    ||||||  ||  ||| |   | ||||||| ||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  18701857 cttcctcgattttattaacttcgtctcttgcccaaacgaggaatctgaatcttcttaccagtgttaacatttgtaataaaatcacccttcttaataacac 18701956  T
Q  218 cctgatagattcttagataagttaat 243  Q
    ||||||||||||||||||||||||||    
T  18701957 cctgatagattcttagataagttaat 18701982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 22 - 243
Target Start/End: Complemental strand, 8159224 - 8158982
Alignment:
Q  22 gtcattatatatctaacagacccatcagtaaaagtatctccagatctaagaatagcaccaaatacaaaaacaatttctccagcatgagcttc-------- 113  Q
    |||||||||||||||||||||||||| ||||||||||||||||||  ||||  |||| |||| |||||||||||||||||||||||||||||            
T  8159224 gtcattatatatctaacagacccatcggtaaaagtatctccagattcaagatgagcatcaaacacaaaaacaatttctccagcatgagcttcatcaactt 8159125  T
Q  114 ----------atcaacttccttaatcatatcataat---gtctcttacccaaacaaggaatcttaatcttctcaccagtgttaacatttgtaataaaatc 200  Q
              ||||||||||| | ||  |||||  |   ||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||    
T  8159124 ccttgattttatcaacttcctcactctcatcatgttcacgtctcttacccaaacgaggaatctcaatcttcttaccagtgttaacatttgtaataaaatc 8159025  T
Q  201 acccttcttaataacaccctgatagattcttagataagttaat 243  Q
    |||||||||||||||||||||||| |||||||| |||||||||    
T  8159024 acccttcttaataacaccctgataaattcttaggtaagttaat 8158982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 200
Target Start/End: Original strand, 409886 - 409951
Alignment:
Q  135 ataatgtctcttacccaaacaaggaatcttaatcttctcaccagtgttaacatttgtaataaaatc 200  Q
    |||| ||||||||  || || ||||| ||||||||||| ||||||||||||||| |||||||||||    
T  409886 ataacgtctcttaaacatacgaggaaccttaatcttcttaccagtgttaacattagtaataaaatc 409951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 83 - 243
Target Start/End: Complemental strand, 35856884 - 35856724
Alignment:
Q  83 atacaaaaacaatttctccagcatgagcttcatcaacttccttaatcatatcataatgtctcttacccaaacaaggaatcttaatcttctcaccagtgtt 182  Q
    |||||| |||||||| |||||||||||| |||| |||||| | |||   |||| ||  |||||||  ||||  |  || |||||||||||||||||||||    
T  35856884 atacaacaacaatttgtccagcatgagcctcattaacttcatcaataccatcacaacttctcttaaacaaatgattaaccttaatcttctcaccagtgtt 35856785  T
Q  183 aacatttgtaataaaatcacccttcttaataacaccctgatagattcttagataagttaat 243  Q
    |||||| ||||||||||| || ||  ||||||| |||||||||||||||||||| ||||||    
T  35856784 aacattagtaataaaatccccttttctaataacgccctgatagattcttagatatgttaat 35856724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 15040308 - 15040348
Alignment:
Q  22 gtcattatatatctaacagacccatcagtaaaagtatctcc 62  Q
    |||||| ||||| ||||||||||||||||||||||||||||    
T  15040308 gtcattgtatatttaacagacccatcagtaaaagtatctcc 15040348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 10541388 - 10541444
Alignment:
Q  175 ccagtgttaacatttgtaataaaatcacccttcttaataacaccctgatagattctt 231  Q
    ||||||||| |||||||||||||||| ||||||  ||| ||||||| ||||||||||    
T  10541388 ccagtgttatcatttgtaataaaatctcccttccgaatgacaccctcatagattctt 10541444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 10846409 - 10846465
Alignment:
Q  175 ccagtgttaacatttgtaataaaatcacccttcttaataacaccctgatagattctt 231  Q
    ||||||||||| |||||||||||||| ||||||  ||| ||||||| ||| ||||||    
T  10846409 ccagtgttaacgtttgtaataaaatcccccttccgaatgacaccctcatatattctt 10846465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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