View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9571_low_17 (Length: 252)
Name: NF9571_low_17
Description: NF9571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9571_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 25208964 - 25208745
Alignment:
| Q |
16 |
aaactctacatctccttgtccattacgagtcgggtcaatggtaactggtaagtgtctgaccttgtaacctcacagaataaagttcatatcctattcagaa |
115 |
Q |
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| T |
25208964 |
aaactctacttctccttgtccattacgattcgggtcaatggtaa-------gtgtctgaccttgtaacctcacagaataaagttcatatcctattcagaa |
25208872 |
T |
|
| Q |
116 |
taattgtgaaaggttatcagtgtcatttaaattactaataatttctccttccgaatatctttttaaaagaactctagatctccaggttagtattttcttg |
215 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25208871 |
caattgtgaaaggttattagtgtcatttaaattactaataatttctccttccgaatatctttttaaaagaactctagatctccaggttagtattttcttg |
25208772 |
T |
|
| Q |
216 |
cgctcaccaagtgcgttgtcctatgct |
242 |
Q |
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||||||||||||||||||||||||||| |
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| T |
25208771 |
cgctcaccaagtgcgttgtcctatgct |
25208745 |
T |
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