View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9571_low_18 (Length: 249)
Name: NF9571_low_18
Description: NF9571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9571_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 8814370 - 8814601
Alignment:
| Q |
1 |
cccactattggggtaaagtacataattactgcaaaatctaacaaatacatctcttaagcacatgattttctcctaacttatacatctaacatatcatggt |
100 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
8814370 |
cccactattggggtaaagtacagagttactgcaaaatctaacaaatacatctcttaagcacatgatttgctcctgacttatacatctaacatatcatggt |
8814469 |
T |
|
| Q |
101 |
tacaaagccttcgctaagaatgaatatccacaagagggcagcaaagacccatcacagtaccacatcctaaatagaaaattgaaataaagaacaacaaaat |
200 |
Q |
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|||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
8814470 |
tacaaagccttcgctaag-------atccaccagagggcagcaaagacccagcacagtaccacatcctaaacagaaaattgaattaaagaacaacaaacc |
8814562 |
T |
|
| Q |
201 |
agaacaccactagaagctaagaagatacaacaccaacac |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
8814563 |
agaacaccactagaagctaagaagatacaacaccaacac |
8814601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 7078309 - 7078161
Alignment:
| Q |
1 |
cccactattggggtaaagtacataattactgcaaaatctaacaaatacatctcttaagcacatgattttctcctaacttatacatctaacatatcatggt |
100 |
Q |
| |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
7078309 |
cccactattggggtaaagtacagagttactgcaaaatctaacaaatacatctcttaagcacatgatttgctcctgacttatacatctaacatatcatggt |
7078210 |
T |
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| Q |
101 |
tacaaagccttcgctaagaatgaatatccacaagagggcagcaaagacc |
149 |
Q |
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| T |
7078209 |
tacaaagccttcactaagaatgaatatccaccagagggcatcaaagacc |
7078161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 21968629 - 21968572
Alignment:
| Q |
3 |
cactattggggtaaagtacataattactgcaaaatctaacaaatacatctcttaagca |
60 |
Q |
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|||||||||| |||| |||||||||| |||| |||||||||||||||||||||||||| |
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|
| T |
21968629 |
cactattgggataaaatacataattagtgcagaatctaacaaatacatctcttaagca |
21968572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 42319333 - 42319429
Alignment:
| Q |
3 |
cactattggggtaaagtacataattactgcaaaatctaacaaatacatctcttaagcacatgattttctcctaacttatacatctaacatatcatggt |
100 |
Q |
| |
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|||||||||||| ||||||| || ||||||||||| |||||||||||| |||| || || || ||||| |||||| ||||||||| |||||||| |
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| T |
42319333 |
cactattggggtcaagtacagcatcactgcaaaatccaacaaatacatc-attaaacaatagacttgctcctgacttatgcatctaacaaatcatggt |
42319429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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