View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9571_low_19 (Length: 248)
Name: NF9571_low_19
Description: NF9571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9571_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 2802416 - 2802655
Alignment:
| Q |
1 |
tttcaggttgtgatttactgaaaatgaatttagctataagttatttggctgaaaactaaaactatgtttaatgatttgttatcaatttgttcttgttgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2802416 |
tttcaggttgtgatttactgaaaatgaatttagctataagttatttggctgaaaactaaaactatgtttaatgatttgttatcaatttgttcttgttgta |
2802515 |
T |
|
| Q |
101 |
actgttcaatatgtgtattctatgctcaattgtgtaaatgaatgacacggataatagtttaaatcaatttctgatgatagctgtggtgctgtgttacatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2802516 |
actgttcaatatgtgtattctatgctcaattgtgtaaatgaatgacacggataatagtttaaatcaatttctgatgatagttgtggtgctgtgttacatg |
2802615 |
T |
|
| Q |
201 |
atattctaatgcaacatcccttcatacaaattaagtataa |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2802616 |
atattctaatgcaacatcccttcatacaaattaagtataa |
2802655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 2 - 199
Target Start/End: Complemental strand, 1659199 - 1659000
Alignment:
| Q |
2 |
ttcaggttgtgatttactgaaaatgaatttagctataagttatttggctgaaaactaaaactatgtttaatgatttgttatcaatttgttcttgttgtaa |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1659199 |
ttcaggttgtgatttactgaaaatgaatttagctataagtcatttggctgaaaactaaaactatgtttaatgatttgttataaatttgttcttgttgtaa |
1659100 |
T |
|
| Q |
102 |
c--tgttcaatatgtgtattctatgctcaattgtgtaaatgaatgacacggataatagtttaaatcaatttctgatgatagctgtggtgctgtgttacat |
199 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1659099 |
ctatgttcaatatgtgtattctatgctcaattgtgtaaatgaatgacacggataatagtttaaatcaatttctgatgatagttgtggtgctgtgttacat |
1659000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 180
Target Start/End: Complemental strand, 1679847 - 1679790
Alignment:
| Q |
123 |
tgctcaattgtgtaaatgaatgacacggataatagtttaaatcaatttctgatgatag |
180 |
Q |
| |
|
|||| |||||| ||| | ||||||| |||||||| ||||||||||||||| ||||||| |
|
|
| T |
1679847 |
tgctaaattgtataagtaaatgacatggataataatttaaatcaatttctaatgatag |
1679790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University