View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9571_low_2 (Length: 428)
Name: NF9571_low_2
Description: NF9571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9571_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 10 - 412
Target Start/End: Original strand, 41037720 - 41038122
Alignment:
| Q |
10 |
gcagagaaccccggacatcaactaactgatggattgatcttctttattgcaccacaagacagtgtgattccacccaactcagaaaatcaatattttggat |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||| |
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| T |
41037720 |
gcagagaaccccggacatcaactaactgatggattgatcttctttattgcaccacaagacactgtgattccacccaattcagaaagtcaatattttggag |
41037819 |
T |
|
| Q |
110 |
tagttgattcaaagaatgcttacaatcaatttgttggtgtagagtttgacctttatcccaatagttttgatccctatatttaccatattggaatcgatgt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41037820 |
tagttgattcaaagaatgcttacaatcaatttgttggtgtagagtttgacctttatcccaatagttttgatccctatatttaccatattggaatcgatgt |
41037919 |
T |
|
| Q |
210 |
caactctataatttcgaccaagatcgtggaatgggattgggaatgggtgagtgaatcattgaatcaagtaagtatagcctatgactctccctctaacaca |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41037920 |
caactctataatttcgaccaagatcgtggaatgggattgggaatgggtgagtgaatcattgaatcaagtaagtatagcctatgactctccctctaacaca |
41038019 |
T |
|
| Q |
310 |
ttgagtgttgttgtcatacatgccaatggcaaaattgttaccattgctgacatagttgatttgaaaactgtgctccccaacacggttaggtttggtctat |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41038020 |
ttgagtgttgttgtcatacatgccaatggcaaaattgttaccattgctgacatagttgatttgaaaactgtgctccccaacacggttaggtttggtctat |
41038119 |
T |
|
| Q |
410 |
ctg |
412 |
Q |
| |
|
||| |
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|
| T |
41038120 |
ctg |
41038122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 33 - 412
Target Start/End: Original strand, 41065933 - 41066306
Alignment:
| Q |
33 |
aactgatggattgatcttctttattgcaccacaagacagtgtgattccacccaactcagaaaatcaatattttggattagttgattcaaagaatgcttac |
132 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||| | |||||||||||||||||||| ||||||| ||||| ||||||||||||| ||| ||||| |
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|
| T |
41065933 |
aactgatggtttggtcttctttattgcaccacaagacactaagattccacccaactcagaaagtcaatatcttggagtagttgattcaaaaaatacttac |
41066032 |
T |
|
| Q |
133 |
aatcaatttgttggtgtagagtttgacctttatcccaatagttttgatccctatatttaccatattggaatcgatgtcaactctataatttcgaccaaga |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||| ||||||| ||||| |
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|
| T |
41066033 |
aatcaatttgttggtgtagagtttgacctttatcccaatagttttgatcccaatacgaaacatattggaatcgatgtcaactctttaatttctctcaaga |
41066132 |
T |
|
| Q |
233 |
tcgtggaatgggattgggaatgggtgagtgaatcattgaatcaagtaagtatagcctatgactctccctctaacacattgagtgttgttgtcatacatgc |
332 |
Q |
| |
|
|||| || ||||||| | ||||| |||||||| | ||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||| |
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|
| T |
41066133 |
ccgtgaaa------tgggaattcgcgagtggatcattgactaaagtaagtaaagcatatgactcttcctctaacacattgagtgttgttgtcacttatgc |
41066226 |
T |
|
| Q |
333 |
caatggcaaaattgttaccattgctgacatagttgatttgaaaactgtgctccccaacacggttaggtttggtctatctg |
412 |
Q |
| |
|
|||||| ||| || |||||||||| | || |||||||||||| ||||||||||||||| |||||||||||||||||||| |
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|
| T |
41066227 |
caatggaaaattttctaccattgctcaaatcgttgatttgaaagctgtgctccccaacaaggttaggtttggtctatctg |
41066306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 33 - 408
Target Start/End: Original strand, 41043785 - 41044154
Alignment:
| Q |
33 |
aactgatggattgatcttctttattgcaccacaagacagtgtgattccacccaactcagaaaatcaatattttggattagttgattcaaagaatgcttac |
132 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||| ||||||||||||| ||||| || | | ||||||| |||||||| | | ||||||||| |
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|
| T |
41043785 |
aactgatggagtgatcttttttattgcaccacaagacactgtgattccaccccactcaacaagtgcacgttttggagtagttgatatagaaaatgcttac |
41043884 |
T |
|
| Q |
133 |
aatcaatttgttggtgtagagtttgacctttatcccaatagttttgatccctatatttaccatattggaatcgatgtcaactctataatttcgaccaaga |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| | |||||||| |||| | ||||||||||||||| |||||||| ||||||||| ||||| |
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|
| T |
41043885 |
aatcaatttgttggtgtagagtttgacctttataccaatattcttgatcccaatatgaaacatattggaatcgatatcaactctttaatttcgagcaaga |
41043984 |
T |
|
| Q |
233 |
tcgtggaatgggattgggaatgggtgagtgaatcattgaatcaagtaagtatagcctatgactctccctctaacacattgagtgttgttgtcatacatgc |
332 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||| |||||||||| |||||||||||| ||||||||| |||||||||||| |||||| ||| |
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|
| T |
41043985 |
tcgtggaatggg------aatgggtgagtggatcattgactcaagtaagtgtagcctatgactttccctctaagacattgagtgttcttgtcacttatga |
41044078 |
T |
|
| Q |
333 |
caatggcaaaattgttaccattgctgacatagttgatttgaaaactgtgctccccaacacggttaggtttggtcta |
408 |
Q |
| |
|
|||| ||||||||| |||| ||||| | ||| ||||||||||||| ||||||||||||||| ||||| |||||||| |
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|
| T |
41044079 |
caatcgcaaaattgctacccttgctcaaataattgatttgaaaaccgtgctccccaacacgattaggcttggtcta |
41044154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 158
Target Start/End: Original strand, 41074111 - 41074145
Alignment:
| Q |
124 |
aatgcttacaatcaatttgttggtgtagagtttga |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
41074111 |
aatgcttacaatcaatttgttggtgtagagtttga |
41074145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 41047360 - 41047304
Alignment:
| Q |
116 |
attcaaagaatgcttacaatcaatttgttggtgtagagtttgacctttatcccaata |
172 |
Q |
| |
|
||||||| ||||||| ||| ||||||||||||||||||||||| |||| |||||| |
|
|
| T |
41047360 |
attcaaataatgcttttaataaatttgttggtgtagagtttgacacttatgccaata |
41047304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 173; Significance: 7e-93; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 37 - 412
Target Start/End: Complemental strand, 8496198 - 8495829
Alignment:
| Q |
37 |
gatggattgatcttctttattgcaccacaagacagtgtgattccacccaactcagaaaatcaatattttggattagttgattcaaagaatgcttacaatc |
136 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| || | || ||||| ||||||||||||| | | ||||||||| |
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|
| T |
8496198 |
gatggattggtcttctttattgcaccacaagacactgtgattccacccaactcagaaagtctacatcttggagtagttgattcaaaaagttcttacaatc |
8496099 |
T |
|
| Q |
137 |
aatttgttggtgtagagtttgacctttatcccaatagttttgatccctatatttaccatattggaatcgatgtcaactctataatttcgaccaagatcgt |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||| ||||| ||| |
|
|
| T |
8496098 |
aatttgttggtgtagagtttgacctttatcccaatagttttgatcccaatacgagacatattggaatcgatgtcaactctttaatttctctcaagaccgt |
8495999 |
T |
|
| Q |
237 |
ggaatgggattgggaatgggtgagtgaatcattgaatcaagtaagtatagcctatgactctccctctaacacattgagtgttgttgtcatacatgccaat |
336 |
Q |
| |
|
| ||||| ||| | ||||| |||||||| | ||||||| ||||| ||||||||| |||| |||||||||||||||||||||| |||||||| |
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|
| T |
8495998 |
------gaattggcaatttgcgagtggatcattgactaaagtaagcatagcttatgactcttcctcaaacacattgagtgttgttgtcacttatgccaat |
8495905 |
T |
|
| Q |
337 |
ggcaaaattgttaccattgctgacatagttgatttgaaaactgtgctccccaacacggttaggtttggtctatctg |
412 |
Q |
| |
|
|| ||| || ||||||||| | ||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
8495904 |
ggaaaattttccaccattgctcaaatagttgatttgaaaacagtgctccccaacaaggttaggtttggtctatctg |
8495829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 412
Target Start/End: Complemental strand, 8488368 - 8488317
Alignment:
| Q |
361 |
atagttgatttgaaaactgtgctccccaacacggttaggtttggtctatctg |
412 |
Q |
| |
|
||||||||||||||||| |||||||| |||| |||||||||||||||||||| |
|
|
| T |
8488368 |
atagttgatttgaaaacagtgctccctaacaaggttaggtttggtctatctg |
8488317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 322
Target Start/End: Original strand, 21489359 - 21489406
Alignment:
| Q |
275 |
aagtaagtatagcctatgactctccctctaacacattgagtgttgttg |
322 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
21489359 |
aagtaagtataatctatgactctccctctaacacattgagtgttgttg |
21489406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 159
Target Start/End: Original strand, 21482869 - 21482904
Alignment:
| Q |
124 |
aatgcttacaatcaatttgttggtgtagagtttgac |
159 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21482869 |
aatgctttcaatcaatttgttggtgtagagtttgac |
21482904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 159
Target Start/End: Original strand, 21493021 - 21493056
Alignment:
| Q |
124 |
aatgcttacaatcaatttgttggtgtagagtttgac |
159 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21493021 |
aatgctttcaatcaatttgttggtgtagagtttgac |
21493056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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