View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9571_low_24 (Length: 210)
Name: NF9571_low_24
Description: NF9571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9571_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 8783532 - 8783352
Alignment:
| Q |
18 |
ctaagcttgagctatgtaacaaactcattgtgaaaagtagaatcaacttaatcagagattggagtttcattggaggatcaagaattgttttgaaacaaaa |
117 |
Q |
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| T |
8783532 |
ctaagcttgagctatgtaacaaactcattgtgaaaagtagaatcaaattaatcagagattggagtttcattggaggatcaagaattgttgtgaaacaaaa |
8783433 |
T |
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| Q |
118 |
agttatgagattggtggcatctcctaaaaaagccagtccagtaaatgcttcttgtaatcctttttctgtgatacctttgct |
198 |
Q |
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| T |
8783432 |
agttatgagattggtggcatctcctaaaaaagccagtccagtaaatgcttcttgtaatcctttttctgtgatacctttgct |
8783352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 7111124 - 7111304
Alignment:
| Q |
18 |
ctaagcttgagctatgtaacaaactcattgtgaaaagtagaatcaacttaatcagagattggagtttcattggaggatcaagaattgttttgaaacaaaa |
117 |
Q |
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||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7111124 |
ctaagtttgagctatgtaaaaaactcattgtgaaaagtagaatcaacttaatcagagattggagtttcattggaggatcaagaattgttgtgaaacaaaa |
7111223 |
T |
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| Q |
118 |
agttatgagattggtggcatctcctaaaaaagccagtccagtaaatgcttcttgtaatcctttttctgtgatacctttgct |
198 |
Q |
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| T |
7111224 |
aattatgagattggtggcatctcctaaaaaagccagtccagtaaatgcttcttgtaatcctttttctgtgatacctttgct |
7111304 |
T |
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