View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9571_low_3 (Length: 382)
Name: NF9571_low_3
Description: NF9571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9571_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 347
Target Start/End: Complemental strand, 26580009 - 26579663
Alignment:
| Q |
18 |
tataataggattgtcggtttgtatgtttagattgacagtgaatttgacaaaatctcagagttaaaactttgaagaaaagtttttaaaagaaattggataa |
117 |
Q |
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| T |
26580009 |
tataataggattgtcggtttgtatgtttagattgacagtgaatttgacaaaatctcagagataaaaccctcaaataaagtttttaaaagaaattggataa |
26579910 |
T |
|
| Q |
118 |
tttactctgatactatcatt-tcattgtcaatctaaacatacactttatcgatctgagtgt----------------gaatactatactatacatctata |
200 |
Q |
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| T |
26579909 |
cttactctgattctatcaatctcactgtcaatctaaacctacactttatcgatctgagtgtcgttggatctgagtgtgaatactatactatacatctata |
26579810 |
T |
|
| Q |
201 |
tctatataaagtaaatttttgaactctcatgtatttttcttttgaattttggatggtaggagctactcctaaatcagttttggagctaatggatgtgaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26579809 |
tctatataaagtaaatttttgaactctcatgtatttttcttttgaattttggatggtaggagctactcctaaatcagttttggagctaatggatgtgaaa |
26579710 |
T |
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| Q |
301 |
gatctaacactagctcatgtcaagagtcatttacaggtatataacta |
347 |
Q |
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| T |
26579709 |
gatctaacactagctcatgtcaagagtcatttacaggtatataacta |
26579663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 257 - 339
Target Start/End: Original strand, 12344890 - 12344972
Alignment:
| Q |
257 |
taggagctactcctaaatcagttttggagctaatggatgtgaaagatctaacactagctcatgtcaagagtcatttacaggta |
339 |
Q |
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| T |
12344890 |
taggagctactccaaaatcagttcttgaactaatggatgtgaaggatcttacattagcacatgtcaagtctcacttacaggta |
12344972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 257 - 340
Target Start/End: Original strand, 29259172 - 29259255
Alignment:
| Q |
257 |
taggagctactcctaaatcagttttggagctaatggatgtgaaagatctaacactagctcatgtcaagagtcatttacaggtat |
340 |
Q |
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| T |
29259172 |
taggagcaacaccaaagtcagttttggaactgatggatgtgaaggatctcacattagctcatgtaaaaagccatttgcaggtat |
29259255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 338
Target Start/End: Original strand, 6455078 - 6455158
Alignment:
| Q |
258 |
aggagctactcctaaatcagttttggagctaatggatgtgaaagatctaacactagctcatgtcaagagtcatttacaggt |
338 |
Q |
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|||||| || || ||||| || || ||| ||||| ||||||| |||||||| ||||| || ||||||||||| |||||||| |
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| T |
6455078 |
aggagcaacaccaaaatctgtgttagagttaatgaatgtgaaggatctaaccctagcacacgtcaagagtcacttacaggt |
6455158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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