View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9571_low_4 (Length: 379)
Name: NF9571_low_4
Description: NF9571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9571_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 2226042 - 2226393
Alignment:
| Q |
18 |
cttttctcatgaaaaacttgagcacatatcaatccagcaataacaactcttttaagttcttcttctacataattaccatttagtcttggatcaacaattt |
117 |
Q |
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| T |
2226042 |
cttttctcatgaaaaacttgagcacatatcaatccagcaataacaactcttttaagttcttcttcaacataattaccatttagtcttggatcaacaattt |
2226141 |
T |
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| Q |
118 |
cattgaatttcttctcacaaatcaatgacaatgcccaatcaactattattttcttcaatgtggaactaacctttatagtttgttttttcccactagctag |
217 |
Q |
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| T |
2226142 |
cattgaatttcttctcacaaaccaatgacaatgcgcaatcaactattgttttcttcaatgtggaactaacctttatagtttgttttttcccactagctag |
2226241 |
T |
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| Q |
218 |
ttctagaagtaggataccaaagctataaacatcacaactttcagttactttacctgatatagcatattctggtgcaacgtagcctaaggtacccttaaca |
317 |
Q |
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| T |
2226242 |
ttctagaagtaggataccaaagctataaacatctcaacttttagttactttacctgatatagcatattctggtgcaacgtagcctaaggtacccttaaca |
2226341 |
T |
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| Q |
318 |
tttgcagtcacttgtgttgctccatcagggatcaacctagcgaacacgaaac |
369 |
Q |
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| T |
2226342 |
tttgcagtcacttgtgttgctccatcagggatcaacctagcgaacccgaaac |
2226393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 353
Target Start/End: Complemental strand, 44772206 - 44772052
Alignment:
| Q |
199 |
gttttttcccactagctagttctagaagtaggataccaaagctataaacatcacaactttcagttactttacctgatatagcatattctggtgcaacgta |
298 |
Q |
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| T |
44772206 |
gttttttgccgctggcaagttcgagaaggagaattccaaaactgtagacatcacaactctcattagctttacctaacatagcatattctggtgcaagata |
44772107 |
T |
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| Q |
299 |
gcctaaggtacccttaacatttgcagtcacttgtgttgctccatcagggatcaac |
353 |
Q |
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| T |
44772106 |
gccaagggtgcccttaactcgagttgtcacatgcgttgctccatcagggatcaac |
44772052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 292
Target Start/End: Original strand, 46145946 - 46146004
Alignment:
| Q |
234 |
ccaaagctataaacatcacaactttcagttactttacctgatatagcatattctggtgc |
292 |
Q |
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| T |
46145946 |
ccaaagctataaacatcacaactctcagaaaccttaccccacatagcatattctggtgc |
46146004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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