View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9571_low_5 (Length: 350)
Name: NF9571_low_5
Description: NF9571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9571_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 332
Target Start/End: Complemental strand, 13855461 - 13855143
Alignment:
| Q |
14 |
agacacataccgatttaacctttccaaacttctccccatcctccgaaaactccttcatcacctccgttctcggatgatgcatccacatagtcccatccat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13855461 |
agacacataccgatttaacctttccaaacttctccccatcctccaaaaactccttcatcacctccgttctcggatgatgcatccacatagtcccatccat |
13855362 |
T |
|
| Q |
114 |
aaactgcaccccacactcctcacacaccttcacaatctcatcaaactccttcacactaaccgccaccggtttctcaagcaacacatgcttccccttcttt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13855361 |
aaactgcaccccacactcctcacacaccttcacaatctcatcaaactccttcacactaaccgccaccggtttctcaagcaacacatgcttccccttcttc |
13855262 |
T |
|
| Q |
214 |
gcagcagccaccgcccatttcacatgcaacgtcgtcagtaatggcaagtaaacagcgtcaacattagggtcgtcaagaacttcttcgtatgagccgtaga |
313 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13855261 |
gcagcagccaccgcccatttcacatgtaacgtcgtcggtaacggcaagtaaacagcgtcaacattagggtcgtcaagaacttcttcgtaagagccgtaga |
13855162 |
T |
|
| Q |
314 |
ttttggcggtgggagggaa |
332 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
13855161 |
ctttggcggtgggacggaa |
13855143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 332
Target Start/End: Complemental strand, 13849669 - 13849353
Alignment:
| Q |
16 |
acacataccgatttaacctttccaaacttctccccatcctccgaaaactccttcatcacctccgttctcggatgatgcatccacatagtcccatccataa |
115 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||| ||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13849669 |
acacataccgatttaaccttgccaaacttctctccatcctccaaaaaccccttcatcacctctgttctaggatgatgcatccacatagtcccatccataa |
13849570 |
T |
|
| Q |
116 |
actgcaccccacactcctcacacaccttcacaatctcatcaaactccttcacactaaccgccaccggtttctcaagcaacacatgcttccccttctttgc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| | ||| ||||||||||||||||| || |
|
|
| T |
13849569 |
actgcaccccacactcctcacacaccttcacaatctcatcaaactccttcacactcacagccaccggcttctctaacaaaacatgcttccccttcttcgc |
13849470 |
T |
|
| Q |
216 |
agcagccaccgcccatttcacatgcaacgtcgtcagtaatggcaagtaaacagcgtcaacattagggtcgtcaagaacttcttcgtatgagccgtagatt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| | || |||| |||||||||||||||||||||||| |||||||||||||| || |||||||||||| |
|
|
| T |
13849469 |
agcagccaccgcccatttcacatgcaacgtagtcggcaacggcacgtaaacagcgtcaacattagggtcatcaagaacttcttcataggagccgtagatt |
13849370 |
T |
|
| Q |
316 |
ttggcggtgggagggaa |
332 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
13849369 |
ttggcggtgggagggaa |
13849353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University