View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9571_low_7 (Length: 345)
Name: NF9571_low_7
Description: NF9571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9571_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 4 - 298
Target Start/End: Original strand, 34030537 - 34030830
Alignment:
| Q |
4 |
ggaatttttcgttctttgcttagaagcttctatagtttttagtcttcccattcaaaacaaataaaataagatatattcaaagaaagattaaaaagaaata |
103 |
Q |
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|||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34030537 |
ggaattttgcgttctt-gcttaaaagcttctatagtttttagtcttcccattcaaaacaaataaaataagatatattcaaagaaagattaaaaagaaata |
34030635 |
T |
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| Q |
104 |
gcattcattagaagagtttactttcaaaccgatggaaataaaataatagaagtaatattatttttaaggaatagaaataatattaacaacactcattctc |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34030636 |
gcattcattagaagagtttactttcaaaccgatggaaataaaataatagaagtaatattttttttaaggaatagaaataatattaacaacactcattctc |
34030735 |
T |
|
| Q |
204 |
catttgttttccattctctgtttgaactatgttgttgatgtaactttttctctgtttggtttccttattattaatatattttattttggtttctt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
34030736 |
catttgttttccattctctgtttgaactatgttgttgatgtaaccttttctctatttagtttccttattattaatatattttagtttggtttctt |
34030830 |
T |
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