View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9571_low_9 (Length: 314)
Name: NF9571_low_9
Description: NF9571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9571_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 11 - 299
Target Start/End: Complemental strand, 5822066 - 5821778
Alignment:
| Q |
11 |
cacagaatcctataaaagacctcaaattcgggtgatgaagcttaccgtggagttcaatttccttcttgaacttccattcgtcggataaatttctcatccg |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5822066 |
cacagaatcctataaaagacctcaaattcgggtgatgaagcttactgtggagttcaatttccttcttgaacttccattcgtcggataaatttctcatccg |
5821967 |
T |
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| Q |
111 |
cttcacttctattggatactcagtttcaccactatgtttgagataacctttgtacactatactgaatagtgattttctaatttttcgatcttcagcaaag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5821966 |
cttcacttctattggatactcagtttcaccactatgtttgagataacctttgtacactatactgaatagtgattttctaatttttcgatcttcagcgaag |
5821867 |
T |
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| Q |
211 |
ttagtggttgatttcctaagttcttcaagagaaaattgatgacatagctcttctataactgttggacattttttattggatgaactttc |
299 |
Q |
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| T |
5821866 |
ttattggttgatttcctaagttcttcaagagaaaattgatgacatagctcttctataactgttggacattttttattggatgaactttc |
5821778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 13 - 280
Target Start/End: Original strand, 4904265 - 4904532
Alignment:
| Q |
13 |
cagaatcctataaaagacctcaaattcgggtgatgaagcttaccgtggagttcaatttccttcttgaacttccattcgtcggataaatttctcatccgct |
112 |
Q |
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||||||||||| ||||| ||||||| ||||||||||| | | ||||||||||||| ||||||||||| |||| ||| | || | | |||||| || |
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| T |
4904265 |
cagaatcctattaaagatatcaaattagggtgatgaagttggctgtggagttcaattaccttcttgaacatccaatcgcccaatctaagtgtcatcctct |
4904364 |
T |
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| Q |
113 |
tcacttctattggatactcagtttcaccactatgtttgagataacctttgtacactatactgaatagtgattttctaatttttcgatcttcagcaaagtt |
212 |
Q |
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| T |
4904365 |
ccaatgctactggatactcattttcaccattatgtttgagataacctttgtacactatactgtatagtgattgtccaagttttcgagtttcatcaaagtt |
4904464 |
T |
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| Q |
213 |
agtggttgatttcctaagttcttcaagagaaaattgatgacatagctcttctataactgttggacatt |
280 |
Q |
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| || |||||||| |||| |||||||||||||||||||| ||||| |||| |||| ||||||||||| |
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| T |
4904465 |
attgcttgatttcttaagatcttcaagagaaaattgatggcatagttcttttatagatgttggacatt |
4904532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 290
Target Start/End: Original strand, 4908187 - 4908466
Alignment:
| Q |
11 |
cacagaatcctataaaagacctcaaattcgggtgatgaagcttaccgtggagttcaatttccttcttgaacttccattcgtcggataaatttctcatccg |
110 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||||| | || |||||||||||||||||||||||||||||| | ||| || | ||||||| |
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| T |
4908187 |
cacagaatcctataaaagacgtcaaatttgggtgatgaagctggcagttgagttcaatttccttcttgaacttccattcattaaatatatgtatcatccg |
4908286 |
T |
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| Q |
111 |
cttcacttctattggatactcagtttcaccactatgtttgagataacctttgtacactatactgaatagtgattttctaatttttcgatcttcagcaaag |
210 |
Q |
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|||||| |||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||| || | | ||| || ||| ||| ||||| |
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| T |
4908287 |
tttcactgctattggataatcagtttcaccattatgtttgagataacctttgtaagctatactgaattctgttaaccctattcttagatgttcgtcaaag |
4908386 |
T |
|
| Q |
211 |
ttagtggttgatttcctaagttcttcaagagaaaattgatgacatagctcttctataactgttggacattttttattgga |
290 |
Q |
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||| | || |||||| |||| || || |||||||||||||| ||| ||||||||||||| |||||| ||| ||| ||||| |
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| T |
4908387 |
ttattagtagatttcttaagatcatccagagaaaattgatggcatcgctcttctataacagttggatattgtttcttgga |
4908466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 119 - 297
Target Start/End: Complemental strand, 4927915 - 4927737
Alignment:
| Q |
119 |
ctattggatactcagtttcaccactatgtttgagataacctttgtacactatactgaatagtgattttctaatttttcgatcttcagcaaagttagtggt |
218 |
Q |
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|||||||||| ||| |||||||| ||| ||||| ||| |||||||| |||||| | | | ||||| ||||||||||| |||| |||||||| |||| |
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| T |
4927915 |
ctattggataatcattttcaccattatatttgacatagcctttgtagactatatcgcccattacttttccaatttttcgattttcatcaaagttattggt |
4927816 |
T |
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| Q |
219 |
tgatttcctaagttcttcaagagaaaattgatgacatagctcttctataactgttggacattttttattggatgaactt |
297 |
Q |
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| |||| |||| || || |||||||| | ||| |||||||| | ||||| ||||| ||||| ||| ||||| |||||| |
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| T |
4927815 |
agctttcttaagctcgtccagagaaaactcatggcatagctcatttataaatgttgaacattgtttcttggacgaactt |
4927737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 297
Target Start/End: Complemental strand, 4921673 - 4921495
Alignment:
| Q |
119 |
ctattggatactcagtttcaccactatgtttgagataacctttgtacactatactgaatagtgattttctaatttttcgatcttcagcaaagttagtggt |
218 |
Q |
| |
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|||||||||| ||| |||||||| ||| ||||| ||| |||||||| |||||| || | | || || ||||||||||| || | |||||||| |||| |
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| T |
4921673 |
ctattggataatcattttcaccattatatttgacatagcctttgtagactatattgtagtttacttgtccaatttttcgatttttatcaaagttattggt |
4921574 |
T |
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| Q |
219 |
tgatttcctaagttcttcaagagaaaattgatgacatagctcttctataactgttggacattttttattggatgaactt |
297 |
Q |
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| |||| |||| || || |||||||| | ||| ||||| |||| ||||| ||||| ||||| ||| ||||| |||||| |
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| T |
4921573 |
agctttcttaagatcgtccagagaaaactcatggcatagttcttttataaatgttgaacattgtttcttggacgaactt |
4921495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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