View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9572_low_1 (Length: 1021)
Name: NF9572_low_1
Description: NF9572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9572_low_1 |
 | |
|
| [»] scaffold0559 (1 HSPs) |
| | |
|
| [»] scaffold0006 (2 HSPs) |
| | |
|
| [»] scaffold0078 (1 HSPs) |
| | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
| [»] scaffold0259 (1 HSPs) |
| | |
|
| [»] scaffold0197 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 908; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 908; E-Value: 0
Query Start/End: Original strand, 11 - 1006
Target Start/End: Original strand, 40827699 - 40828694
Alignment:
| Q |
11 |
agataatacttgggatggatactgtgagaaactaagaccagggttaactgtttttcatctcagtttggttatttaaagaaagtgttcaagcatcttcgga |
110 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
40827699 |
agatagtacttgggatggatattgtgagaaactaagacaagggttaactgtttttcatctcagtttggttatttaaagaaagtgttcaagcatcttagga |
40827798 |
T |
|
| Q |
111 |
tgaatgatgatataagaccaccagaacacctttaggtcttcacaaaaagttatcggttatttaatctcctcaatcagaaagtaagaaaaagaagaaggtg |
210 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40827799 |
tgaatgatgatataagaccactagaacacctttaggtcttcacaaaaagttatcggttatgtaatctcctcaatcagaaagtaagaaaaagaagaaggtg |
40827898 |
T |
|
| Q |
211 |
aagggtactccttgtgtaaacggggtaggaagcatcatgtatgtcgtggtttattatagtaggtcaaacttagcatatgcggttaacagaatgagtcaac |
310 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40827899 |
aagggtactccttgtgtaaatggggtaggaagcatcatgtatgtcgtggtttattatagtaggtcaaacttagcatatgcggttaacataatgagtcaac |
40827998 |
T |
|
| Q |
311 |
ttatagcaaatttgggtcacgtgcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaac |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40827999 |
ttatagcaaatttgggtcacgtgcattggcaagacttgaagtggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaac |
40828098 |
T |
|
| Q |
411 |
tcaagaggaagatgcttttgagggttatgtagatgtgaaactatgcacgaaatttggacactagaacatccttattgggatttgtgtttacattgtttgg |
510 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40828099 |
tcaagaggaagatgctttggagggttatgtagatgtgaaactatgcacgaaatttggacactagaacatccttattgggatttgtgtttacattgtttgg |
40828198 |
T |
|
| Q |
511 |
aacgactattggcttgaaggaaaatgttaggtgtttgagcaggggtcgttcgacatttctaaacaactttttcacattttcagggttgtggctgtcacct |
610 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40828199 |
aacgactattggcttgaaggaaaatgttaggcgtttgagcaggggtcgttcaacatttctaaacaactttttcacattttcagggttgtggttgtcacct |
40828298 |
T |
|
| Q |
611 |
cccatatggacataagggtctaaccgccaagagcagggcgctaggtgtcaggcatgttttctgcatcatttaaattaagtgttctcattcttttctagtt |
710 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
40828299 |
cccatatggacataagggtctaaccgccaagagcagggtgctaggtgtcaggcatgttttctgcatcatttaaattcagtgttctcattcttttctagtt |
40828398 |
T |
|
| Q |
711 |
aatcttgtaagagcaaaagagagaacttttagaaaacttaaagaataagatttgaatgtttttgggtgaaattagagttgataaatacattctaaacacc |
810 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40828399 |
aatcttgtaagagcaaaagagagaacttttagaaaacttaaagaataagatttgaatgtttttgggtgaaattagagttgataaatacattctaaacacc |
40828498 |
T |
|
| Q |
811 |
ttatatagtgagatcccattggaggattggtcgatgttttctctttttatttctcttaagatcatctattgaattgacaggtttgaaaaaaggggtagaa |
910 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
40828499 |
ttatatagtgagatcccattggaggattggtcgatgttttctcttttgatttctcttaagatcatctattgaattgagaggtttgaaaaaaggggtagaa |
40828598 |
T |
|
| Q |
911 |
ataagggcttcctcttgagatctcttgaagataatattggtgttttgttcctttactctcttgtatttactctttagtttgattgtggatttattt |
1006 |
Q |
| |
|
||||||| || |||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40828599 |
ataagggttttctcttgagatctctcgaagataatatttgtgttttgttcctttactctcttgtctttactctttagtttgattgtggatttattt |
40828694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 278 - 501
Target Start/End: Original strand, 33036595 - 33036817
Alignment:
| Q |
278 |
acttagcatatgcggttaacagaatgagtcaacttatagcaaatttgggtcacgtgcattggcaagacttgaattggatattgagatactgaaacgggtc |
377 |
Q |
| |
|
|||||||||||||||||| || |||||| |||| |||||| |||| ||||||||||||| ||||| ||| ||||||| || | || ||||| |
|
|
| T |
33036595 |
acttagcatatgcggttagcattgtgagtcggtttatggcaaatccgggtattgtgcattggcaagctttgaagtgggtattgaggtatttgaatgggtc |
33036694 |
T |
|
| Q |
378 |
attaaatggcggtttgaaatacacaagagcaactcaagaggaagatgcttttgagggttatgtagatgtgaaactatgcacgaaatttggacactagaac |
477 |
Q |
| |
|
|| || ||||||||||| |||||||||||| ||||||| ||||| ||||| ||||| ||||| |||| | ||||||| ||||| |||||||||||| |
|
|
| T |
33036695 |
tttgaagggcggtttgaagtacacaagagcagctcaagatgaagacgctttggaggggtatgttgatgcg-gactatgcgggaaatgtggacactagaaa |
33036793 |
T |
|
| Q |
478 |
atccttattgggatttgtgtttac |
501 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
33036794 |
atccttattgggatttgtgtttac |
33036817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 331 - 501
Target Start/End: Complemental strand, 26297754 - 26297585
Alignment:
| Q |
331 |
gtgcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaactcaagaggaagatgcttttg |
430 |
Q |
| |
|
||||||||||||| ||||| ||| ||||||| || | || | ||| || || ||||||||||| ||||||||| || ||||||||||||| ||||| | |
|
|
| T |
26297754 |
gtgcattggcaagctttgaagtgggtattgaggtatttgaatgagtctttgaagggcggtttgaagtacacaagatcagctcaagaggaagacgctttgg |
26297655 |
T |
|
| Q |
431 |
agggttatgtagatgtgaaactatgcacgaaatttggacactagaacatccttattgggatttgtgtttac |
501 |
Q |
| |
|
|||| ||||| |||| | |||||||| | ||| |||||||||||| |||||||| ||| ||||||||||| |
|
|
| T |
26297654 |
aggggtatgttgatgcg-aactatgcgggcaatgtggacactagaaaatccttatcgggttttgtgtttac |
26297585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 331 - 501
Target Start/End: Complemental strand, 26311011 - 26310842
Alignment:
| Q |
331 |
gtgcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaactcaagaggaagatgcttttg |
430 |
Q |
| |
|
||||||||||||| ||||| ||| ||||||| || | || | ||| || || ||||||||||| ||||||||| || ||||||||||||| ||||| | |
|
|
| T |
26311011 |
gtgcattggcaagctttgaagtgggtattgaggtatttgaatgagtctttgaagggcggtttgaagtacacaagatcagctcaagaggaagacgctttgg |
26310912 |
T |
|
| Q |
431 |
agggttatgtagatgtgaaactatgcacgaaatttggacactagaacatccttattgggatttgtgtttac |
501 |
Q |
| |
|
|||| ||||| |||| | |||||||| | ||| |||||||||||| |||||||| ||| ||||||||||| |
|
|
| T |
26310911 |
aggggtatgttgatgcg-aactatgcgggcaatgtggacactagaaaatccttatcgggttttgtgtttac |
26310842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 331 - 501
Target Start/End: Original strand, 18869385 - 18869554
Alignment:
| Q |
331 |
gtgcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaactcaagaggaagatgcttttg |
430 |
Q |
| |
|
||||||||||||| ||||| ||| ||||||| || | || ||||| || || ||||||||||| |||||||| ||| ||||||| ||||| || || | |
|
|
| T |
18869385 |
gtgcattggcaagctttgaagtgggtattgaggtatttgaatgggtctttgaagggcggtttgaagtacacaagggcagctcaagatgaagacgcattgg |
18869484 |
T |
|
| Q |
431 |
agggttatgtagatgtgaaactatgcacgaaatttggacactagaacatccttattgggatttgtgtttac |
501 |
Q |
| |
|
|||| ||||| |||| | ||||||| | ||| |||||||||||| |||||||| ||| ||||||||||| |
|
|
| T |
18869485 |
aggggtatgttgatgcg-gactatgcgggcaatgtggacactagaaaatccttatcgggttttgtgtttac |
18869554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 331 - 501
Target Start/End: Original strand, 19751251 - 19751420
Alignment:
| Q |
331 |
gtgcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaactcaagaggaagatgcttttg |
430 |
Q |
| |
|
||||||||||||| ||||| ||| | ||||| || | || ||||| || || ||||||||||| |||||||||||| |||||||| |||| ||||| | |
|
|
| T |
19751251 |
gtgcattggcaagctttgaagtgggtgttgaggtatttgaatgggtctttgaagggcggtttgaagtacacaagagcagctcaagagaaagacgctttgg |
19751350 |
T |
|
| Q |
431 |
agggttatgtagatgtgaaactatgcacgaaatttggacactagaacatccttattgggatttgtgtttac |
501 |
Q |
| |
|
|||| ||||| |||| | ||||||| | ||| ||||||| |||| |||||||| ||| ||||||||||| |
|
|
| T |
19751351 |
aggggtatgttgatgcg-gactatgcgggcaatgtggacacaagaaaatccttatcgggttttgtgtttac |
19751420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 386 - 445
Target Start/End: Original strand, 26402119 - 26402178
Alignment:
| Q |
386 |
gcggtttgaaatacacaagagcaactcaagaggaagatgcttttgagggttatgtagatg |
445 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||| ||||| ||||| ||||| |||| |
|
|
| T |
26402119 |
gcggtttgaagtacacaagagcagctcaagaggaagacgctttggaggggtatgttgatg |
26402178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 331 - 501
Target Start/End: Complemental strand, 35741761 - 35741592
Alignment:
| Q |
331 |
gtgcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaactcaagaggaagatgcttttg |
430 |
Q |
| |
|
||||||||||||| ||||| ||| | ||||| || | || ||||| || || ||||||||||| |||||||| ||| ||||||| ||||| ||||| | |
|
|
| T |
35741761 |
gtgcattggcaagctttgaagtgggttttgaggtatttgaatgggtcgttgaagggcggtttgaagtacacaagggcagctcaagatgaagacgctttgg |
35741662 |
T |
|
| Q |
431 |
agggttatgtagatgtgaaactatgcacgaaatttggacactagaacatccttattgggatttgtgtttac |
501 |
Q |
| |
|
|||| ||||| |||| | | ||||| |||| |||||||||||| |||||| | ||| ||||||||||| |
|
|
| T |
35741661 |
aggggtatgttgatgcg-gattatgcgggaaacgtggacactagaaaatccttgtcgggttttgtgtttac |
35741592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 331 - 445
Target Start/End: Original strand, 10687979 - 10688093
Alignment:
| Q |
331 |
gtgcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaactcaagaggaagatgcttttg |
430 |
Q |
| |
|
||||||||||||| ||||| ||| | ||||| || | || ||||| || || ||||||||||| |||||||| ||| ||||||| ||||| ||||| | |
|
|
| T |
10687979 |
gtgcattggcaagctttgaagtgggttttgaggtatttgaatgggtcgttgaagggcggtttgaagtacacaagggcagctcaagatgaagacgctttgg |
10688078 |
T |
|
| Q |
431 |
agggttatgtagatg |
445 |
Q |
| |
|
|||| ||||| |||| |
|
|
| T |
10688079 |
aggggtatgttgatg |
10688093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 853; Significance: 0; HSPs: 1)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 853; E-Value: 0
Query Start/End: Original strand, 11 - 1002
Target Start/End: Original strand, 5287 - 6286
Alignment:
| Q |
11 |
agataatacttgggatggatactgtgagaaactaagaccagggttaactgtttttcatctcagtttggttatttaaagaaagtgttcaagcatcttcgga |
110 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5287 |
agatagtacttgggatggatattgtgagaaactaagacaagggttaactgtttttcatctcagtttggttatttaaagaaagtgttcaagcatcttagga |
5386 |
T |
|
| Q |
111 |
tgaatgatgatataagaccaccagaacacctttaggtcttcacaaaaagttatcggttatttaatctcctcaatcagaaagtaagaaaaagaagaaggtg |
210 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5387 |
tgaatgatgatataagaccactagaacacctttaggtcttcacaaaaagttatcggttatgtaatctcctcaatcagaaagtaagaaaaagaagaaggtg |
5486 |
T |
|
| Q |
211 |
aagggtactccttgtgtaaacggggtaggaagcatcatgtatgtcgtggtttattatagtaggtcaaacttagcatatgcggttaacagaatgagtcaac |
310 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5487 |
aagggtactccttgtgtaaatggggtaggaagcatcatgtatgtcgtggtttattatagtaggtcaaacttagcatatgcggttaacataatgagtcaac |
5586 |
T |
|
| Q |
311 |
ttatagcaaatttgggtcacgtgcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaac |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5587 |
ttatagcaaatttgggtcacgtgcattggcaagacttgaagtggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaac |
5686 |
T |
|
| Q |
411 |
tcaagaggaagatgcttttgagggttatgtagatgtgaaactatgcacgaaatttggacactagaacatccttattgggatttgtgtttacattgtttgg |
510 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5687 |
tcaagaggaagatgctttggagggttatgtagatgtgaaactatgcacgaaatttggacactagaacatccttattgggatttgtgtttacattgtttgg |
5786 |
T |
|
| Q |
511 |
aacgactattggcttgaaggaaaatgttaggtgtttgagcaggggtcgttcgacatttctaaacaactttttcacattttcagggttgtggctgtcacct |
610 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5787 |
aacgactattggcttgaaggaaaatgttaggcgtttgagcaggggtcgttcaacatttctaaacaactttttcacattttcagggttgtggttgtcacct |
5886 |
T |
|
| Q |
611 |
cccatatggacataagggtctaaccgccaagagcagggcgctaggtgtcaggcatgttttctgcatcatttaaattaagtgttctcattcttttctagtt |
710 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5887 |
cccatatggacataagggtctaaccgccaagagcagggtgctaggtgtcaggcatgttttctgcatcatttaaattcagtgttctcattcttttctagtt |
5986 |
T |
|
| Q |
711 |
aatcttgtaagagcaaaagagagaacttttagaaaactt-aaagaa--taagatttgaatgtttttgggtgaaattagagttgataaatacattctaaac |
807 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5987 |
aatcttgtaagagcaaaagagagaacttttagaaaacttaaaagaaataaagatttgaatgtttttgggtgaaattagagttgataaatacattctaaac |
6086 |
T |
|
| Q |
808 |
accttatatagtgagatcccattggaggattggtcgatgttttctctttt-tatttc-tcttaag-atcatctattgaattgacaggtttg-aaaaaagg |
903 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| ||||||| |||||||| |
|
|
| T |
6087 |
accttatatagtgagatcccattggaggattggtcgatgttttctcttttgtatttcttcttaagaatcatctattgaattgagaggtttgaaaaaaagg |
6186 |
T |
|
| Q |
904 |
ggtagaaataagggcttcctcttgagatctcttgaagataatattggtgttttgttcctttactctcttgtatttactc-tttagtttgattgtggattt |
1002 |
Q |
| |
|
|||||||||||||| || |||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
6187 |
ggtagaaataagggttttctcttgagatctctcgaagataatatttgtgttttgttcctttactctcttgtctttactcttttagtttgattgtggattt |
6286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 1e-22; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 318 - 501
Target Start/End: Original strand, 19360260 - 19360442
Alignment:
| Q |
318 |
aaatttgggtcacgtgcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaactcaagag |
417 |
Q |
| |
|
|||||||||| ||||||||||||| ||||| ||| ||||||| || | || ||||| || || ||||||||||| |||||||||||| |||||||| |
|
|
| T |
19360260 |
aaatttgggtattgtgcattggcaagctttgaagtgggtattgaggtatttgaatgggtctttgaagggcggtttgaagtacacaagagcagctcaagag |
19360359 |
T |
|
| Q |
418 |
gaagatgcttttgagggttatgtagatgtgaaactatgcacgaaatttggacactagaacatccttattgggatttgtgtttac |
501 |
Q |
| |
|
|||||| |||| ||||| ||||| |||| | ||||||| | ||| |||||||||||| |||||||||| | ||||||||||| |
|
|
| T |
19360360 |
gaagattctttggaggggtatgttgatg-cagactatgcgggcaatgtggacactagaaaatccttattgagttttgtgtttac |
19360442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 385 - 501
Target Start/End: Complemental strand, 13599561 - 13599446
Alignment:
| Q |
385 |
ggcggtttgaaatacacaagagcaactcaagaggaagatgcttttgagggttatgtagatgtgaaactatgcacgaaatttggacactagaacatcctta |
484 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||| || ||||| ||||| |||| | ||||||| | ||| ||||||| |||| ||| ||| |
|
|
| T |
13599561 |
ggcggtttgaagtacacaagagcagctcaagaggaagatgccttggaggggtatgttgatg-cagactatgcgggtaatgtggacacaagaaaatcttta |
13599463 |
T |
|
| Q |
485 |
ttgggatttgtgtttac |
501 |
Q |
| |
|
| ||| ||||||||||| |
|
|
| T |
13599462 |
tcgggttttgtgtttac |
13599446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 385 - 501
Target Start/End: Original strand, 47101776 - 47101891
Alignment:
| Q |
385 |
ggcggtttgaaatacacaagagcaactcaagaggaagatgcttttgagggttatgtagatgtgaaactatgcacgaaatttggacactagaacatcctta |
484 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| ||||||| ||| ||||| ||||| |||| | ||||||| | ||| ||||||| |||| ||| || |
|
|
| T |
47101776 |
ggcggtttgaagtacacaagagcagctcaagatgaagatgttttggaggggtatgttgatgcg-gactatgcgggcaatgtggacacaagaaaatctcta |
47101874 |
T |
|
| Q |
485 |
ttgggatttgtgtttac |
501 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
47101875 |
ttggggtttgtgtttac |
47101891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 334 - 445
Target Start/End: Complemental strand, 41391821 - 41391710
Alignment:
| Q |
334 |
cattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaactcaagaggaagatgcttttgagg |
433 |
Q |
| |
|
|||||||||| ||||| ||| ||||||| || | || ||||| || || ||||||||||| |||||||| ||||||||||| ||||| ||||| |||| |
|
|
| T |
41391821 |
cattggcaagctttgaagtgggtattgaggtatttgaatgggtcgttgaagggcggtttgaagtacacaagggcaactcaagatgaagacgctttggagg |
41391722 |
T |
|
| Q |
434 |
gttatgtagatg |
445 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
41391721 |
ggtatgttgatg |
41391710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 385 - 530
Target Start/End: Original strand, 47702805 - 47702949
Alignment:
| Q |
385 |
ggcggtttgaaatacacaagagcaactcaagaggaagatgcttttgagggttatgtagatgtgaaactatgcacgaaatttggacactagaacatcctta |
484 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||| |||| ||||| ||||| |||| | ||||||| | ||| ||||||| |||| ||| || |
|
|
| T |
47702805 |
ggcggtttgaagtacacaagagcagctcaagaggaagacactttggaggggtatgttgatgcg-gactatgcgggcaatgtggacacaagaaaatctcta |
47702903 |
T |
|
| Q |
485 |
ttgggatttgtgtttacattgtttggaacgactattggcttgaagg |
530 |
Q |
| |
|
| ||| ||||||||||| | | ||| ||||||||| | ||||||| |
|
|
| T |
47702904 |
tcgggttttgtgtttactctctatggcacgactattagtttgaagg |
47702949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 4e-22; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 331 - 501
Target Start/End: Complemental strand, 1307243 - 1307074
Alignment:
| Q |
331 |
gtgcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaactcaagaggaagatgcttttg |
430 |
Q |
| |
|
||||||||||||| ||||| ||| ||||||| || | || ||||| || || ||||||||||| |||||||||||| ||||||||||||| ||||| | |
|
|
| T |
1307243 |
gtgcattggcaagctttgaagtgggtattgaggtatttgaatgggtctttgaagggcggtttgaagtacacaagagcagctcaagaggaagacgctttgg |
1307144 |
T |
|
| Q |
431 |
agggttatgtagatgtgaaactatgcacgaaatttggacactagaacatccttattgggatttgtgtttac |
501 |
Q |
| |
|
|||| ||||| |||| | ||||||| | ||| |||||||||||| |||||||| ||| ||||||||||| |
|
|
| T |
1307143 |
aggggtatgttgatgcg-gactatgcgggcaatgtggacactagaaaatccttatcgggttttgtgtttac |
1307074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 386 - 501
Target Start/End: Original strand, 3327258 - 3327372
Alignment:
| Q |
386 |
gcggtttgaaatacacaagagcaactcaagaggaagatgcttttgagggttatgtagatgtgaaactatgcacgaaatttggacactagaacatccttat |
485 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||| ||||| |||||||||| | ||||||| | ||| |||||| |||| |||||||| |
|
|
| T |
3327258 |
gcggtttgaagtacacaagagcagctcaagaggaagatgctttggaggggtatgtagatg-cagactatgcgggcaatgtggacatgagaaaatccttat |
3327356 |
T |
|
| Q |
486 |
tgggatttgtgtttac |
501 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
3327357 |
cgggttttgtgtttac |
3327372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 331 - 501
Target Start/End: Original strand, 22172023 - 22172192
Alignment:
| Q |
331 |
gtgcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaactcaagaggaagatgcttttg |
430 |
Q |
| |
|
||||||||||||| ||||| ||| ||||||| || | || ||||| || || ||||||||||| |||||||| ||| ||||||| ||||| ||||| | |
|
|
| T |
22172023 |
gtgcattggcaagctttgaagtgggtattgaggtatttgaatgggtctttgaagggcggtttgaagtacacaagggcagctcaagatgaagacgctttgg |
22172122 |
T |
|
| Q |
431 |
agggttatgtagatgtgaaactatgcacgaaatttggacactagaacatccttattgggatttgtgtttac |
501 |
Q |
| |
|
|||| ||||| |||| | | |||||| | || |||||||||||| |||||||| ||| ||||||||||| |
|
|
| T |
22172123 |
aggggtatgttgatgcg-gattatgcaggcaacgtggacactagaaaatccttatcgggttttgtgtttac |
22172192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 385 - 501
Target Start/End: Original strand, 6793635 - 6793750
Alignment:
| Q |
385 |
ggcggtttgaaatacacaagagcaactcaagaggaagatgcttttgagggttatgtagatgtgaaactatgcacgaaatttggacactagaacatcctta |
484 |
Q |
| |
|
||||||||||| |||||||||||| || ||| ||||| ||||| ||||| |||||||||| | ||||||| | ||| ||||||| |||| ||||||| |
|
|
| T |
6793635 |
ggcggtttgaagtacacaagagcagatcgagatgaagacgctttggaggggtatgtagatgcg-gactatgcgggcaatgtggacacaagaaaatcctta |
6793733 |
T |
|
| Q |
485 |
ttgggatttgtgtttac |
501 |
Q |
| |
|
| ||| ||||||||||| |
|
|
| T |
6793734 |
tcgggttttgtgtttac |
6793750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 331 - 445
Target Start/End: Original strand, 2675935 - 2676049
Alignment:
| Q |
331 |
gtgcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaactcaagaggaagatgcttttg |
430 |
Q |
| |
|
||||||||||||| ||||| ||| | ||||| || | || ||||| || || ||||||||||| |||||||| ||| ||||||| ||||| ||||| | |
|
|
| T |
2675935 |
gtgcattggcaagctttgaagtgggttttgaggtatttgaatgggtcgttgaaaggcggtttgaagtacacaagggcagctcaagatgaagacgctttgg |
2676034 |
T |
|
| Q |
431 |
agggttatgtagatg |
445 |
Q |
| |
|
|||| ||||| |||| |
|
|
| T |
2676035 |
aggggtatgttgatg |
2676049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 331 - 445
Target Start/End: Complemental strand, 8513466 - 8513352
Alignment:
| Q |
331 |
gtgcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaactcaagaggaagatgcttttg |
430 |
Q |
| |
|
||||||||||||| ||||| ||| | ||||| || | || ||||| || || ||||||||||| |||||||| ||| ||||||| ||||| ||||| | |
|
|
| T |
8513466 |
gtgcattggcaagctttgaagtgggttttgaggtatttgaatgggtcgttgaagggcggtttgaagtacacaagggcagctcaagatgaagacgctttgg |
8513367 |
T |
|
| Q |
431 |
agggttatgtagatg |
445 |
Q |
| |
|
|||| ||||| |||| |
|
|
| T |
8513366 |
aggggtatgttgatg |
8513352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 3e-17; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 331 - 501
Target Start/End: Original strand, 9188860 - 9189029
Alignment:
| Q |
331 |
gtgcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaactcaagaggaagatgcttttg |
430 |
Q |
| |
|
||||||||||||| ||||| ||| | ||||| || | || ||||| || || ||||||||||| |||||||||||| |||||||| |||| ||||||| |
|
|
| T |
9188860 |
gtgcattggcaagctttgaagtgggtgttgaggtatttgaatgggtctttgaagggcggtttgaagtacacaagagcagctcaagagaaagacgcttttg |
9188959 |
T |
|
| Q |
431 |
agggttatgtagatgtgaaactatgcacgaaatttggacactagaacatccttattgggatttgtgtttac |
501 |
Q |
| |
|
|||| ||||| |||| | ||||||| | ||| ||||||| |||| |||||||| ||| ||||||||||| |
|
|
| T |
9188960 |
aggggtatgttgatgcg-gactatgcgggcaatgtggacacaagaaaatccttatcgggttttgtgtttac |
9189029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 331 - 501
Target Start/End: Complemental strand, 21984505 - 21984336
Alignment:
| Q |
331 |
gtgcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaactcaagaggaagatgcttttg |
430 |
Q |
| |
|
||||||||||||| ||||| ||| | ||||| || | || ||||| || || ||||||||||| |||||||||||| ||||||||||||| ||||| | |
|
|
| T |
21984505 |
gtgcattggcaagctttgaagtgggtgttgaggtatttgaatgggtctttgaagggcggtttgaagtacacaagagcagctcaagaggaagacgctttgg |
21984406 |
T |
|
| Q |
431 |
agggttatgtagatgtgaaactatgcacgaaatttggacactagaacatccttattgggatttgtgtttac |
501 |
Q |
| |
|
|||| ||||| |||| | |||||||| | ||| ||||||| |||| ||| ||| ||| ||||||||||| |
|
|
| T |
21984405 |
aggggtatgttgatgcg-aactatgcgggtaatgtggacacaagaaaatctctatcgggttttgtgtttac |
21984336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 331 - 445
Target Start/End: Complemental strand, 12398127 - 12398013
Alignment:
| Q |
331 |
gtgcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaactcaagaggaagatgcttttg |
430 |
Q |
| |
|
||||||||||||| ||||| ||| ||||||| || | || ||||| || || ||||||||||| |||||||| ||||||||||| ||||| ||||| | |
|
|
| T |
12398127 |
gtgcattggcaagctttgaagtgggtattgaggtatttgaatgggtctttgaagggcggtttgaagtacacaagggcaactcaagatgaagacgctttgg |
12398028 |
T |
|
| Q |
431 |
agggttatgtagatg |
445 |
Q |
| |
|
|||| ||||| |||| |
|
|
| T |
12398027 |
aggggtatgttgatg |
12398013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 385 - 440
Target Start/End: Original strand, 24273674 - 24273729
Alignment:
| Q |
385 |
ggcggtttgaaatacacaagagcaactcaagaggaagatgcttttgagggttatgt |
440 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||| ||||| ||||| ||||| |
|
|
| T |
24273674 |
ggcggtttgaagtacacaagagcagctcaagaggaagacgctttggaggggtatgt |
24273729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 331 - 445
Target Start/End: Complemental strand, 16881299 - 16881185
Alignment:
| Q |
331 |
gtgcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaactcaagaggaagatgcttttg |
430 |
Q |
| |
|
||||||||||||| ||||| ||| | ||||| |||| || ||||| || || ||||||||||| |||||||| ||| ||||||| ||||| ||||| | |
|
|
| T |
16881299 |
gtgcattggcaagctttgaagtgggtgttgaggtacttgaatgggtcgttgaagggcggtttgaagtacacaagggcagctcaagatgaagacgctttgg |
16881200 |
T |
|
| Q |
431 |
agggttatgtagatg |
445 |
Q |
| |
|
|||| ||||| |||| |
|
|
| T |
16881199 |
aggggtatgttgatg |
16881185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 331 - 445
Target Start/End: Complemental strand, 18410029 - 18409915
Alignment:
| Q |
331 |
gtgcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaactcaagaggaagatgcttttg |
430 |
Q |
| |
|
||||||||||||| ||||| ||| | ||||| || | || ||||| || || ||||||||||| |||||||||||| |||||||| |||| ||||| | |
|
|
| T |
18410029 |
gtgcattggcaagctttgaagtgggtgttgaggtatttgaatgggtctttgaagggcggtttgaagtacacaagagcagctcaagagaaagacgctttgg |
18409930 |
T |
|
| Q |
431 |
agggttatgtagatg |
445 |
Q |
| |
|
|||| ||||| |||| |
|
|
| T |
18409929 |
aggggtatgttgatg |
18409915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 331 - 445
Target Start/End: Complemental strand, 21641062 - 21640948
Alignment:
| Q |
331 |
gtgcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaactcaagaggaagatgcttttg |
430 |
Q |
| |
|
||||||||||||| ||||| ||| | ||||| || | || ||||| || || ||||||||||| |||||||| ||| ||||||| ||||| ||||| | |
|
|
| T |
21641062 |
gtgcattggcaagctttgaagtgggttttgaggtatttgaatgggtcgttgaagggcggtttgaagtacacaagggcagctcaagatgaagacgctttgg |
21640963 |
T |
|
| Q |
431 |
agggttatgtagatg |
445 |
Q |
| |
|
|||| ||||| |||| |
|
|
| T |
21640962 |
aggggtatgttgatg |
21640948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 331 - 445
Target Start/End: Original strand, 24265038 - 24265152
Alignment:
| Q |
331 |
gtgcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaactcaagaggaagatgcttttg |
430 |
Q |
| |
|
||||||||||||| ||||| ||| | ||||| || | || ||||| || || ||||||||||| |||||||| ||| ||||||| ||||| ||||| | |
|
|
| T |
24265038 |
gtgcattggcaagctttgaagtgggttttgaggtatttgaatgggtcgttgaagggcggtttgaagtacacaagggcagctcaagatgaagacgctttgg |
24265137 |
T |
|
| Q |
431 |
agggttatgtagatg |
445 |
Q |
| |
|
|||| ||||| |||| |
|
|
| T |
24265138 |
aggggtatgttgatg |
24265152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 3e-17; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 331 - 501
Target Start/End: Complemental strand, 27446195 - 27446026
Alignment:
| Q |
331 |
gtgcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaactcaagaggaagatgcttttg |
430 |
Q |
| |
|
||||||||||||| |||||| ||| ||||||| || | || ||||| || || ||||||||||| |||||||| ||| ||||||| ||||| ||||| | |
|
|
| T |
27446195 |
gtgcattggcaagccttgaagtgggtattgaggtatttgaatgggtcgttgaagggcggtttgaagtacacaagggcagctcaagatgaagacgctttgg |
27446096 |
T |
|
| Q |
431 |
agggttatgtagatgtgaaactatgcacgaaatttggacactagaacatccttattgggatttgtgtttac |
501 |
Q |
| |
|
|||| ||||| |||| | | ||||| | ||| |||||||||||| |||||||| ||| ||||||||||| |
|
|
| T |
27446095 |
aggggtatgttgatgcg-gattatgctggcaatgtggacactagaaaatccttatcgggttttgtgtttac |
27446026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 331 - 501
Target Start/End: Complemental strand, 43593493 - 43593324
Alignment:
| Q |
331 |
gtgcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaactcaagaggaagatgcttttg |
430 |
Q |
| |
|
||||||||||||| |||||| ||| ||||||| || | || ||||| || || ||||||||||| |||||||| ||| ||||||| ||||| ||||| | |
|
|
| T |
43593493 |
gtgcattggcaagccttgaagtgggtattgaggtatttgaatgggtcgttgaagggcggtttgaagtacacaagggcagctcaagatgaagacgctttgg |
43593394 |
T |
|
| Q |
431 |
agggttatgtagatgtgaaactatgcacgaaatttggacactagaacatccttattgggatttgtgtttac |
501 |
Q |
| |
|
|||| ||||| |||| | | ||||| | ||| |||||||||||| |||||||| ||| ||||||||||| |
|
|
| T |
43593393 |
aggggtatgttgatgcg-gattatgcgggcaatgtggacactagaaaatccttatcgggttttgtgtttac |
43593324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 331 - 501
Target Start/End: Complemental strand, 43626287 - 43626118
Alignment:
| Q |
331 |
gtgcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaactcaagaggaagatgcttttg |
430 |
Q |
| |
|
||||||||||||| |||||| ||| ||||||| || | || ||||| || || ||||||||||| |||||||| ||| ||||||| ||||| ||||| | |
|
|
| T |
43626287 |
gtgcattggcaagccttgaagtgggtattgaggtatttgaatgggtcgttgaagggcggtttgaagtacacaagggcagctcaagatgaagacgctttgg |
43626188 |
T |
|
| Q |
431 |
agggttatgtagatgtgaaactatgcacgaaatttggacactagaacatccttattgggatttgtgtttac |
501 |
Q |
| |
|
|||| ||||| |||| | | ||||| | ||| |||||||||||| |||||||| ||| ||||||||||| |
|
|
| T |
43626187 |
aggggtatgttgatgcg-gattatgcgggcaatgtggacactagaaaatccttatcgggttttgtgtttac |
43626118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 385 - 501
Target Start/End: Complemental strand, 28833377 - 28833262
Alignment:
| Q |
385 |
ggcggtttgaaatacacaagagcaactcaagaggaagatgcttttgagggttatgtagatgtgaaactatgcacgaaatttggacactagaacatcctta |
484 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| ||||| |||| ||||| |||||||||| | ||||||| | ||| ||||||| |||| ||||||| |
|
|
| T |
28833377 |
ggcggtttgaagtacacaagagcagctcaagatgaagacactttggaggggtatgtagatgcg-gactatgcgggcaatgtggacacaagaaaatcctta |
28833279 |
T |
|
| Q |
485 |
ttgggatttgtgtttac |
501 |
Q |
| |
|
||| | ||||||||||| |
|
|
| T |
28833278 |
ttgagttttgtgtttac |
28833262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 331 - 501
Target Start/End: Original strand, 28806437 - 28806606
Alignment:
| Q |
331 |
gtgcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaactcaagaggaagatgcttttg |
430 |
Q |
| |
|
||||||||||||| ||||| ||| | ||||| || | || ||||| || || ||||||||||| |||||||| ||| ||||||| ||||||||||| | |
|
|
| T |
28806437 |
gtgcattggcaagctttgaagtgggttttgaggtatttgaatgggtcgttgaagggcggtttgaagtacacaagggcagctcaagatgaagatgctttgg |
28806536 |
T |
|
| Q |
431 |
agggttatgtagatgtgaaactatgcacgaaatttggacactagaacatccttattgggatttgtgtttac |
501 |
Q |
| |
|
|||| ||||| |||| | | ||||| | ||| |||||||||||| |||||| | ||| ||||||||||| |
|
|
| T |
28806537 |
aggggtatgttgatgcg-gattatgcgggcaatgtggacactagaaaatccttgtcgggttttgtgtttac |
28806606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 331 - 445
Target Start/End: Complemental strand, 33769411 - 33769297
Alignment:
| Q |
331 |
gtgcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaactcaagaggaagatgcttttg |
430 |
Q |
| |
|
||||||||||||| ||||| ||| | ||||| || | || ||||| || || ||||||||||| |||||||| ||| ||||||| ||||| ||||| | |
|
|
| T |
33769411 |
gtgcattggcaagctttgaagtgggttttgaggtatttgaatgggtcgttgaagggcggtttgaagtacacaagggcagctcaagatgaagacgctttgg |
33769312 |
T |
|
| Q |
431 |
agggttatgtagatg |
445 |
Q |
| |
|
|||| ||||| |||| |
|
|
| T |
33769311 |
aggggtatgttgatg |
33769297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 331 - 445
Target Start/End: Original strand, 37560308 - 37560422
Alignment:
| Q |
331 |
gtgcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaactcaagaggaagatgcttttg |
430 |
Q |
| |
|
||||||||||||| ||||| ||| | ||||| || | || ||||| || || ||||||||||| |||||||| ||| ||||||| ||||| ||||| | |
|
|
| T |
37560308 |
gtgcattggcaagctttgaagtgggttttgaggtatttgaatgggtcgttgaagggcggtttgaagtacacaagggcagctcaagatgaagacgctttgg |
37560407 |
T |
|
| Q |
431 |
agggttatgtagatg |
445 |
Q |
| |
|
|||| ||||| |||| |
|
|
| T |
37560408 |
aggggtatgttgatg |
37560422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 331 - 501
Target Start/End: Complemental strand, 24714165 - 24713996
Alignment:
| Q |
331 |
gtgcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaactcaagaggaagatgcttttg |
430 |
Q |
| |
|
||||||||||||| ||||| ||| ||||||| || | || ||||| || || || |||||||| |||||||||||| ||||||||||||| | ||| | |
|
|
| T |
24714165 |
gtgcattggcaagctttgaagtgggtattgaggtatttgaatgggtctttgaagggaggtttgaagtacacaagagcagctcaagaggaagacgttttgg |
24714066 |
T |
|
| Q |
431 |
agggttatgtagatgtgaaactatgcacgaaatttggacactagaacatccttattgggatttgtgtttac |
501 |
Q |
| |
|
|||| |||||||||| | ||||||| | ||| ||||||| |||| |||||||| | | ||||||||||| |
|
|
| T |
24714065 |
aggggtatgtagatgcg-gactatgcgggtaatgtggacacaagaaaatccttatcgagttttgtgtttac |
24713996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 445
Target Start/End: Original strand, 24434752 - 24434911
Alignment:
| Q |
286 |
tatgcggttaacagaatgagtcaacttatagcaaatttgggtcacgtgcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatg |
385 |
Q |
| |
|
||||||||||||| ||||||| |||| ||||||| |||| ||||||||||||| ||||| ||| | ||||| || | || |||| || || | |
|
|
| T |
24434752 |
tatgcggttaacattgtgagtcagtttatggcaaattcgggtattgtgcattggcaagctttgaagtgggtgttgaggtatttgaatcggtctttgaagg |
24434851 |
T |
|
| Q |
386 |
gcggtttgaaatacacaagagcaactcaagaggaagatgcttttgagggttatgtagatg |
445 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||| ||||| | || |||||||||| |
|
|
| T |
24434852 |
gcggtttgaagtacacaagagcagctcaagaggaagacgctttgcaagggtatgtagatg |
24434911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 331 - 445
Target Start/End: Original strand, 33334791 - 33334905
Alignment:
| Q |
331 |
gtgcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaactcaagaggaagatgcttttg |
430 |
Q |
| |
|
||||||||||||| ||||| ||| | ||||| || | || ||||| || || ||||||||||| |||||||| ||| ||||||| ||||| ||||| | |
|
|
| T |
33334791 |
gtgcattggcaagctttgaagtgggtgttgaggtatttgaatgggtcgttgaagggcggtttgaagtacacaagggcagctcaagatgaagacgctttgg |
33334890 |
T |
|
| Q |
431 |
agggttatgtagatg |
445 |
Q |
| |
|
|||| ||||| |||| |
|
|
| T |
33334891 |
aggggtatgttgatg |
33334905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 385 - 501
Target Start/End: Complemental strand, 6846 - 6731
Alignment:
| Q |
385 |
ggcggtttgaaatacacaagagcaactcaagaggaagatgcttttgagggttatgtagatgtgaaactatgcacgaaatttggacactagaacatcctta |
484 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||| || ||||| ||||| |||| | ||||||| | ||| ||||||| |||| ||| ||| |
|
|
| T |
6846 |
ggcggtttgaagtacacaagagcagctcaagaggaagatgccttggaggggtatgttgatg-cagactatgcgggtaatgtggacacaagaaaatcttta |
6748 |
T |
|
| Q |
485 |
ttgggatttgtgtttac |
501 |
Q |
| |
|
| ||| ||||||||||| |
|
|
| T |
6747 |
tcgggttttgtgtttac |
6731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 385 - 501
Target Start/End: Complemental strand, 7358 - 7243
Alignment:
| Q |
385 |
ggcggtttgaaatacacaagagcaactcaagaggaagatgcttttgagggttatgtagatgtgaaactatgcacgaaatttggacactagaacatcctta |
484 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||| || ||||| ||||| |||| | ||||||| | ||| ||||||| |||| ||| ||| |
|
|
| T |
7358 |
ggcggtttgaagtacacaagagcagctcaagaggaagatgccttggaggggtatgttgatg-cagactatgcgggtaatgtggacacaagaaaatcttta |
7260 |
T |
|
| Q |
485 |
ttgggatttgtgtttac |
501 |
Q |
| |
|
| ||| ||||||||||| |
|
|
| T |
7259 |
tcgggttttgtgtttac |
7243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 333 - 445
Target Start/End: Original strand, 16627709 - 16627821
Alignment:
| Q |
333 |
gcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaactcaagaggaagatgcttttgag |
432 |
Q |
| |
|
||||||||||| ||||| ||| | ||||| || | || ||||| || || ||||||||||| |||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
16627709 |
gcattggcaagctttgaagtgggtgttgaggtatttgaatgggtctttgaagggcggtttgaagtacacaagagcagctcaagaggaagatgctttggag |
16627808 |
T |
|
| Q |
433 |
ggttatgtagatg |
445 |
Q |
| |
|
|| ||||| |||| |
|
|
| T |
16627809 |
gggtatgttgatg |
16627821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 331 - 445
Target Start/End: Original strand, 3791847 - 3791961
Alignment:
| Q |
331 |
gtgcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaactcaagaggaagatgcttttg |
430 |
Q |
| |
|
||||||||||||| ||||| ||| | ||||| || | || ||||| || || ||||||||||| |||||||||||| ||||||||||||| ||||| | |
|
|
| T |
3791847 |
gtgcattggcaagctttgaagtgggtgttgaggtatttgaatgggtctttgaagggcggtttgaagtacacaagagcagctcaagaggaagacgctttgg |
3791946 |
T |
|
| Q |
431 |
agggttatgtagatg |
445 |
Q |
| |
|
|||| ||||| |||| |
|
|
| T |
3791947 |
aggggtatgttgatg |
3791961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 331 - 501
Target Start/End: Original strand, 9228047 - 9228216
Alignment:
| Q |
331 |
gtgcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaactcaagaggaagatgcttttg |
430 |
Q |
| |
|
||||||||||||| ||||| ||| ||||||| || | || ||||| || || || |||||||| |||||||| ||| ||||||| ||||| ||||| | |
|
|
| T |
9228047 |
gtgcattggcaagctttgaagtgggtattgaggtatttgaatgggtccttgaagggtggtttgaagtacacaagggcagctcaagatgaagacgctttgg |
9228146 |
T |
|
| Q |
431 |
agggttatgtagatgtgaaactatgcacgaaatttggacactagaacatccttattgggatttgtgtttac |
501 |
Q |
| |
|
|||| ||||| |||| | | ||||| | || |||||||||||| |||||||| ||| ||||||||||| |
|
|
| T |
9228147 |
aggggtatgttgatgcg-gattatgcgggcaacgtggacactagaaaatccttatcgggttttgtgtttac |
9228216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 331 - 445
Target Start/End: Complemental strand, 18856948 - 18856834
Alignment:
| Q |
331 |
gtgcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaactcaagaggaagatgcttttg |
430 |
Q |
| |
|
||||||||||||| ||||| ||| | ||||| || | || ||||| || || ||||||||||| |||||||| ||| ||||||| ||||| ||||| | |
|
|
| T |
18856948 |
gtgcattggcaagctttgaagtgggttttgaggtatttgaatgggtcgttgaagggcggtttgaagtacacaagggcagctcaagatgaagacgctttgg |
18856849 |
T |
|
| Q |
431 |
agggttatgtagatg |
445 |
Q |
| |
|
|||| ||||| |||| |
|
|
| T |
18856848 |
aggggtatgttgatg |
18856834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 389 - 445
Target Start/End: Complemental strand, 33354 - 33298
Alignment:
| Q |
389 |
gtttgaaatacacaagagcaactcaagaggaagatgcttttgagggttatgtagatg |
445 |
Q |
| |
|
||||||| |||||||||||| |||||||| |||| ||| | |||||||||||||||| |
|
|
| T |
33354 |
gtttgaagtacacaagagcagctcaagagaaagacgctctagagggttatgtagatg |
33298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 421 - 513
Target Start/End: Original strand, 36819 - 36910
Alignment:
| Q |
421 |
gatgcttttgagggttatgtagatgtgaaactatgcacgaaatttggacactagaacatccttattgggatttgtgtttacattgtttggaac |
513 |
Q |
| |
|
|||||||| ||||| ||||||||||| | |||||| | ||||| | |||||||||| ||| || | || ||||||||||||||||||||||| |
|
|
| T |
36819 |
gatgctttggagggatatgtagatgt-agactatgtaggaaatatagacactagaaaatctttgtcaggttttgtgtttacattgtttggaac |
36910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 331 - 445
Target Start/End: Original strand, 1100 - 1214
Alignment:
| Q |
331 |
gtgcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaactcaagaggaagatgcttttg |
430 |
Q |
| |
|
||||||||||||| ||||| ||| | ||||| || | || ||||| || || ||||||||||| |||||||| ||| ||||||| ||||| ||||| | |
|
|
| T |
1100 |
gtgcattggcaagctttgaagtgggttttgaggtatttgaatgggtcgttgaagggcggtttgaagtacacaagggcagctcaagatgaagacgctttgg |
1199 |
T |
|
| Q |
431 |
agggttatgtagatg |
445 |
Q |
| |
|
|||| ||||| |||| |
|
|
| T |
1200 |
aggggtatgttgatg |
1214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 331 - 445
Target Start/End: Original strand, 13145 - 13259
Alignment:
| Q |
331 |
gtgcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaactcaagaggaagatgcttttg |
430 |
Q |
| |
|
||||||||||||| ||||| ||| | ||||| || | || ||||| || || ||||||||||| |||||||| ||| ||||||| ||||| ||||| | |
|
|
| T |
13145 |
gtgcattggcaagctttgaagtgggttttgaggtatttgaatgggtcgttgaagggcggtttgaagtacacaagggcagctcaagatgaagacgctttgg |
13244 |
T |
|
| Q |
431 |
agggttatgtagatg |
445 |
Q |
| |
|
|||| ||||| |||| |
|
|
| T |
13245 |
aggggtatgttgatg |
13259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 331 - 445
Target Start/End: Original strand, 18024 - 18138
Alignment:
| Q |
331 |
gtgcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaactcaagaggaagatgcttttg |
430 |
Q |
| |
|
||||||||||||| ||||| ||| | ||||| || | || ||||| || || ||||||||||| |||||||| ||| ||||||| ||||| ||||| | |
|
|
| T |
18024 |
gtgcattggcaagctttgaagtgggttttgaggtatttgaatgggtcgttgaagggcggtttgaagtacacaagggcagctcaagatgaagacgctttgg |
18123 |
T |
|
| Q |
431 |
agggttatgtagatg |
445 |
Q |
| |
|
|||| ||||| |||| |
|
|
| T |
18124 |
aggggtatgttgatg |
18138 |
T |
|
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Target: chr2 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 331 - 445
Target Start/End: Complemental strand, 19345650 - 19345536
Alignment:
| Q |
331 |
gtgcattggcaagacttgaattggatattgagatactgaaacgggtcattaaatggcggtttgaaatacacaagagcaactcaagaggaagatgcttttg |
430 |
Q |
| |
|
||||||||||||| ||||| ||| | ||||| || | || ||||| || || ||||||||||| |||||||| ||| ||||||| ||||| ||||| | |
|
|
| T |
19345650 |
gtgcattggcaagctttgaagtgggttttgaggtatttgaatgggtcgttgaagggcggtttgaagtacacaagggcagctcaagatgaagacgctttgg |
19345551 |
T |
|
| Q |
431 |
agggttatgtagatg |
445 |
Q |
| |
|
|||| ||||| |||| |
|
|
| T |
19345550 |
aggggtatgttgatg |
19345536 |
T |
|
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