View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9572_low_10 (Length: 317)
Name: NF9572_low_10
Description: NF9572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9572_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 55421567 - 55421279
Alignment:
| Q |
19 |
ctattgccattggcttttacccaaagccactcatgtcgatgcacgtcaaacacagttataggataaaatcttagtttgatatatcttataactaatgtca |
118 |
Q |
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| T |
55421567 |
ctattgccattggcttttacccaaagccactcatgtcgatgcacgtcaaatacagttataggataaaatcttagtttgatatatcttataactaatgtca |
55421468 |
T |
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| Q |
119 |
aacacatcctattggtccgaccaacactattatttgatatatcttatatcatcattcttactctagttaccaaacagattcctaatgcatataatatttt |
218 |
Q |
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| T |
55421467 |
aacacatcctattggtccgaccaacactattatttgatatatcttatatcatcattcttactctagttaccaaacagattcctaatgcatataatatttt |
55421368 |
T |
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| Q |
219 |
ctctttcattgtaatggctgtaaaacatgcctatagttgattatacgggacatatttgcaggtgcttacgagtgacacggtgttctctg |
307 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
55421367 |
ctctttcattttaatggctgtaaaacatgcctatagttgattatacgggaaatatttgcaggtgcttacgagtgacacggtgttctctg |
55421279 |
T |
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