View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9572_low_13 (Length: 265)
Name: NF9572_low_13
Description: NF9572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9572_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 32736380 - 32736132
Alignment:
| Q |
1 |
catagatatgtaagaggataaattatcacatgactgatttctccttatatatgggtagagatttaattggataaaagaaagactacatgctcatatatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32736380 |
catagatatgtaagaggataaattatcacatgactgatttctccttatatatgggtagagatataattggataaaagaaagactacatgctcatatatat |
32736281 |
T |
|
| Q |
101 |
agtaattttcccaaaatattaattgatagatgaaatgatgcnnnnnnnnagaagagatggaataatgttgtgaagactaatttagtcagtaactattttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32736280 |
agtaattttcccaaaatattaattgatagatgaaatgatgcttttttttagaagagatggaataatgttgtgaagactaatttagtcagtaactattttt |
32736181 |
T |
|
| Q |
201 |
ataaaaactcagcgataatttttagctttcacaagaatcagtacatctt |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
32736180 |
ataaaaactcagcgataatttttagctttcacaagaatcaatatatctt |
32736132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University