View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9572_low_16 (Length: 247)

Name: NF9572_low_16
Description: NF9572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9572_low_16
NF9572_low_16
[»] chr6 (5 HSPs)
chr6 (16-247)||(13855524-13855755)
chr6 (16-136)||(13851773-13851893)
chr6 (135-189)||(33303630-33303684)
chr6 (136-185)||(13851711-13851760)
chr6 (135-167)||(9195788-9195820)
[»] chr1 (2 HSPs)
chr1 (136-189)||(34298407-34298460)
chr1 (136-184)||(10572624-10572672)
[»] chr8 (1 HSPs)
chr8 (80-136)||(34897122-34897178)
[»] chr7 (4 HSPs)
chr7 (87-138)||(38143258-38143309)
chr7 (135-173)||(927871-927909)
chr7 (136-184)||(27945017-27945065)
chr7 (135-179)||(30516391-30516435)
[»] chr5 (1 HSPs)
chr5 (136-185)||(22423847-22423896)
[»] chr4 (2 HSPs)
chr4 (136-173)||(43061708-43061745)
chr4 (136-184)||(22440635-22440683)
[»] chr3 (2 HSPs)
chr3 (136-189)||(12674536-12674589)
chr3 (135-171)||(35335590-35335626)
[»] scaffold0122 (1 HSPs)
scaffold0122 (144-184)||(8642-8682)
[»] chr2 (1 HSPs)
chr2 (135-171)||(37497109-37497145)


Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 13855755 - 13855524
Alignment:
Q  16 acatcaatagcataactttctgttttggttctaaattttggatctagcttatagttaagtaacaatgaagtacgaacactcctcgggttacgtgtgtcgg 115  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  13855755 acatcaatggcataactttctgttttggttctaaattttggatctagcttatagttaagtaactatgaagtacgaacactcctcgggttaggtgtgtcgg 13855656  T
Q  116 acatcgacacatataattacattttctcaaattattagtagtgtcgatgtgtcagtttccatgtcgtgtttggtaacgggtgtctatatccgttcttcat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13855655 acatcgacacatataattacattttctcaaattattagtagtgtcgatgtgtcagtttccatgtcgtgtttagtaacgggtgtctatatccgttcttcat 13855556  T
Q  216 aggtatacttaaaattatcctcgataactacg 247  Q
    ||||||||||||||||||||||||||||||||    
T  13855555 aggtatacttaaaattatcctcgataactacg 13855524  T

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Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 13851893 - 13851773
Alignment:
Q  16 acatcaatagcataactttctgttttggttctaaattttggatctagcttatagttaagtaacaatgaagtacgaacactcctcgggttacgtgtgtcgg 115  Q
    |||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |   ||| ||||| ||||| | ||||| |    
T  13851893 acatcaaaggcataactttctgttttggttcttaattttggatctagcttatagttaagtaactatgaagcatagacattcctcaggttaggcgtgtcag 13851794  T
Q  116 acatcgacacatataattaca 136  Q
    |||||||||||||||||||||    
T  13851793 acatcgacacatataattaca 13851773  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 189
Target Start/End: Complemental strand, 33303684 - 33303630
Alignment:
Q  135 cattttctcaaattattagtagtgtcgatgtgtcagtttccatgtcgtgtttggt 189  Q
    |||||| ||||||||||| |||||||||||||||||| ||| | |||||| ||||    
T  33303684 cattttttcaaattattattagtgtcgatgtgtcagtgtccgtatcgtgtctggt 33303630  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 13851760 - 13851711
Alignment:
Q  136 attttctcaaattattagtagtgtcgatgtgtcagtttccatgtcgtgtt 185  Q
    ||||||||||||||||||  ||||||| |||||||| ||| |||||||||    
T  13851760 attttctcaaattattagcggtgtcgacgtgtcagtgtccgtgtcgtgtt 13851711  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 9195788 - 9195820
Alignment:
Q  135 cattttctcaaattattagtagtgtcgatgtgt 167  Q
    ||||||||||||||||||| |||||||||||||    
T  9195788 cattttctcaaattattaggagtgtcgatgtgt 9195820  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 34298460 - 34298407
Alignment:
Q  136 attttctcaaattattagtagtgtcgatgtgtcagtttccatgtcgtgtttggt 189  Q
    ||||||||||||||||||| |||||| ||||||||||||| |||||||| ||||    
T  34298460 attttctcaaattattagtggtgtcggtgtgtcagtttccgtgtcgtgtctggt 34298407  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 10572624 - 10572672
Alignment:
Q  136 attttctcaaattattagtagtgtcgatgtgtcagtttccatgtcgtgt 184  Q
    ||||||||||||||||||| ||||||  |||||||| | ||||||||||    
T  10572624 attttctcaaattattagtggtgtcggcgtgtcagtgttcatgtcgtgt 10572672  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 34897178 - 34897122
Alignment:
Q  80 atgaagtacgaacactcctcgggttacgtgtgtcggacatcgacacatataattaca 136  Q
    |||||| ||| ||||||||||  |||| |||||| ||||||||||||||||||||||    
T  34897178 atgaagcacggacactcctcgaattacatgtgtccgacatcgacacatataattaca 34897122  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 138
Target Start/End: Complemental strand, 38143309 - 38143258
Alignment:
Q  87 acgaacactcctcgggttacgtgtgtcggacatcgacacatataattacatt 138  Q
    ||||||||||||||| ||| ||||||| |||| | |||||||||||||||||    
T  38143309 acgaacactcctcggattaggtgtgtctgacaccaacacatataattacatt 38143258  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 927871 - 927909
Alignment:
Q  135 cattttctcaaattattagtagtgtcgatgtgtcagttt 173  Q
    |||||||||||||||||| ||||||||| ||||||||||    
T  927871 cattttctcaaattattattagtgtcgacgtgtcagttt 927909  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 27945065 - 27945017
Alignment:
Q  136 attttctcaaattattagtagtgtcgatgtgtcagtttccatgtcgtgt 184  Q
    ||||||||||||||||||| ||||||  |||||||| ||| ||||||||    
T  27945065 attttctcaaattattagtggtgtcggcgtgtcagtgtccgtgtcgtgt 27945017  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 30516391 - 30516435
Alignment:
Q  135 cattttctcaaattattagtagtgtcgatgtgtcagtttccatgt 179  Q
    |||||||||||||||||  ||||||||| |||||||| |||||||    
T  30516391 cattttctcaaattattgttagtgtcgacgtgtcagtgtccatgt 30516435  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 22423847 - 22423896
Alignment:
Q  136 attttctcaaattattagtagtgtcgatgtgtcagtttccatgtcgtgtt 185  Q
    |||||||||||||||||||||||||   |||||||| ||| |||||||||    
T  22423847 attttctcaaattattagtagtgtcagggtgtcagtatccgtgtcgtgtt 22423896  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 43061708 - 43061745
Alignment:
Q  136 attttctcaaattattagtagtgtcgatgtgtcagttt 173  Q
    ||||||||||||||||| |||||||||||| |||||||    
T  43061708 attttctcaaattattactagtgtcgatgtttcagttt 43061745  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 22440635 - 22440683
Alignment:
Q  136 attttctcaaattattagtagtgtcgatgtgtcagtttccatgtcgtgt 184  Q
    |||||||||||||||||   |||||||||| ||||| ||||||||||||    
T  22440635 attttctcaaattattaacggtgtcgatgtatcagtgtccatgtcgtgt 22440683  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 12674536 - 12674589
Alignment:
Q  136 attttctcaaattattagtagtgtcgatgtgtcagtttccatgtcgtgtttggt 189  Q
    |||||||||||||||||| ||||||| ||||||| | ||| |||||||| ||||    
T  12674536 attttctcaaattattagcagtgtcggtgtgtcaatgtccgtgtcgtgtctggt 12674589  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 35335626 - 35335590
Alignment:
Q  135 cattttctcaaattattagtagtgtcgatgtgtcagt 171  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  35335626 cattttctcaaattattactagtgtctatgtgtcagt 35335590  T

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Target: scaffold0122 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 8682 - 8642
Alignment:
Q  144 aaattattagtagtgtcgatgtgtcagtttccatgtcgtgt 184  Q
    |||||||||| |||||||| |||||||| ||||||||||||    
T  8682 aaattattagaagtgtcgacgtgtcagtgtccatgtcgtgt 8642  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 37497145 - 37497109
Alignment:
Q  135 cattttctcaaattattagtagtgtcgatgtgtcagt 171  Q
    ||||||||||||||||||  |||||||||||||||||    
T  37497145 cattttctcaaattattatcagtgtcgatgtgtcagt 37497109  T

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