View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9572_low_2 (Length: 720)

Name: NF9572_low_2
Description: NF9572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9572_low_2
NF9572_low_2
[»] chr5 (2 HSPs)
chr5 (91-459)||(25382723-25383090)
chr5 (446-668)||(25383109-25383346)
[»] chr6 (4 HSPs)
chr6 (91-459)||(10123322-10123690)
chr6 (91-459)||(19306734-19307118)
chr6 (446-548)||(10123185-10123303)
chr6 (446-499)||(19306662-19306715)
[»] chr1 (6 HSPs)
chr1 (91-459)||(28245078-28245463)
chr1 (118-363)||(11474694-11474939)
chr1 (118-363)||(11502734-11502979)
chr1 (446-548)||(28244941-28245059)
chr1 (317-359)||(11474970-11475012)
chr1 (317-359)||(11503010-11503052)
[»] chr7 (2 HSPs)
chr7 (91-456)||(22490323-22490703)
chr7 (444-668)||(22490059-22490304)
[»] chr2 (4 HSPs)
chr2 (91-363)||(38252027-38252299)
chr2 (91-363)||(43157243-43157515)
chr2 (317-359)||(38251954-38251996)
chr2 (317-359)||(43157546-43157588)
[»] chr4 (4 HSPs)
chr4 (168-417)||(48795375-48795628)
chr4 (495-656)||(48795637-48795797)
chr4 (446-668)||(44574240-44574476)
chr4 (91-175)||(48794550-48794634)


Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 91 - 459
Target Start/End: Original strand, 25382723 - 25383090
Alignment:
Q  91 aaaaccacttagtagtgttattttggctcctgttagtgtgctgtcttaggattgtgcagccacacctctgctaagttgttatagcagcagctttagttcc 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25382723 aaaaccacttagtagtgttattttggctcctgttagtgtgctgtcttaggattgtgcagccacacctctgctaagttgttatagcagcagctttagttcc 25382822  T
Q  191 ccatggtgggtattttttggggtttgtcccannnnnnncctgctgaattatagtagtagtgttatagcagcctctgccatacattgactttgtattttga 290  Q
    |||||||||||||||||||||||||||||||       ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25382823 ccatggtgggtattttttggggtttgtcccatttttt-cctgctgaattatagcagtagtgttatagcagcctctgccatacattgactttgtattttga 25382921  T
Q  291 atggaatatacaatattttgctagcctaattgtgttatagcagcctctgtcatttgttcgtttctatttatgcattttttcgcttattgaattgtttcaa 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  25382922 atggaatatacaatattttgctagcctaattgtgttatagcagcctctgtcatttgttcgattctatttatgcattttttcgcttattgagttgtttcaa 25383021  T
Q  391 ttgcacatccatattgaattaaatatttacaattatattgagttgtttcataatacatgtacattgtgt 459  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  25383022 ttgcacatccatattgaattaaatattaacaattatattgagttgtttcataatacatgtacattgtgt 25383090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 446 - 668
Target Start/End: Original strand, 25383109 - 25383346
Alignment:
Q  446 catgtacattgtgttgtcaacaactttctctgcttcatcttccaccaatttga----------------tgtctttgaaacattacacttcatcatattg 529  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||                |||||||||||||||||||||||||||||||    
T  25383109 catgtacattgtgttgtcaacaactttctctgcttcatctttcaccaatttgatattgatttccattgatgtctttgaaacattacacttcatcatattg 25383208  T
Q  530 aacatttttaccacctcatttacataatttctttcatgtggaatggtttccctttcggttttcacaagtttcctttcaagaaagtatgacaaattcttct 629  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25383209 aacatttttagcacctcatttacataatttctttcatgttgaatggtttccctttcggttttcacaagtttcctttcaagaaagtatgac-aattcttct 25383307  T
Q  630 atattagcatttcaaactcagacttcatcaatctcttaa 668  Q
    |||||||||||||||||||||||||||||||||||||||    
T  25383308 atattagcatttcaaactcagacttcatcaatctcttaa 25383346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 91 - 459
Target Start/End: Complemental strand, 10123690 - 10123322
Alignment:
Q  91 aaaaccacttagtagtgttattttggctcctgttagtgtgctgtcttaggattgtgcagccacacctctgctaagttgttatagcagcagctttagttcc 190  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10123690 aaaaccacttagtagtgttattttggatcctgttagtgtgctgtcttaggattgtgcagccacacctctgctaagttgttatagcagcaactttagttcc 10123591  T
Q  191 ccatggtgggtattttttggggtttgtcccannnnnnncctgctgaattatagtagtagtgttatagcagcctctgccatacattgactttgtattttga 290  Q
    ||||||||||||||||||| |||||||||||       ||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||    
T  10123590 ccatggtgggtattttttgcggtttgtcccatttttttcctgctgaattatagcagtagttttatagcagcttctgccatacattgactttgtattttga 10123491  T
Q  291 atggaatatacaatattttgctagcctaattgtgttatagcagcctctgtcatttgttcgtttctatttatgcattttttcgcttattgaattgtttcaa 390  Q
    ||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  10123490 atgcaatatacaatattttgttagcctaattgtgttatagcagcctctatcatttgttcgtttctatttatgcgttttttcgcttattgagttgtttcaa 10123391  T
Q  391 ttgcacatccatattgaattaaatatttacaattatattgagttgtttcataatacatgtacattgtgt 459  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  10123390 ttgcacatccatattgaattaaatattaacaattatattgagttgttttataatacatgtacattgtgt 10123322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 91 - 459
Target Start/End: Complemental strand, 19307118 - 19306734
Alignment:
Q  91 aaaaccacttagtagtgttattttggctcctgttagtgtgctgtcttaggattgtgcagccacacctctgctaagttgttatagcagcagctttagttcc 190  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19307118 aaaatcacttagtagtgttattttggatcctgttagtgtgctgtcttaggattgtgcagccacacctctgctaagttgttatagcagcagctttagttcc 19307019  T
Q  191 ccatggtgggtattttttggggtttgtcccannnnnnncctgctgaattatagtagtagtgttatagcagcctctgccatacattgactttgtattttga 290  Q
    |||||||||||||||||||||||||||||||       ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  19307018 ccatggtgggtattttttggggtttgtcccatttttttcctgctgaattatagcagtagtgttatagcagcttctgccatacattgactttgtattttga 19306919  T
Q  291 atggaatatacaatattttgctagcctaattgtgttatagcagcctctgtcatttgttcgtttctatttatgcattttttcgc----------------t 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||                |    
T  19306918 atggaatatacaatattttgctagcctaattgtgttatagcagcctctatcatttgttcgtttctatttatgcgttttttcgcttatgaattttttcgct 19306819  T
Q  375 tattgaattgtttcaattgcacatccatattgaattaaatatttacaattatattgagttgtttcataatacatgtacattgtgt 459  Q
    |||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  19306818 tattaagttgtttcaattgcacatccatattgaattaaatattaacaattatattgagttgttttataatacatgtacattgtgt 19306734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 446 - 548
Target Start/End: Complemental strand, 10123303 - 10123185
Alignment:
Q  446 catgtacattgtgttgtcaacaactttctctgcttcatcttccaccaatttgat----------------gtctttgaaacattacacttcatcatattg 529  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||                ||||||||||||||||||||||||||||||    
T  10123303 catgtacattgtgttgtcaacaactttctctgtttcatctttcaccaatttgatattggtttccattgatgtctttgaaacattacacttcatcatattg 10123204  T
Q  530 aacatttttaccacctcat 548  Q
    |||||||||| ||||||||    
T  10123203 aacatttttagcacctcat 10123185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 446 - 499
Target Start/End: Complemental strand, 19306715 - 19306662
Alignment:
Q  446 catgtacattgtgttgtcaacaactttctctgcttcatcttccaccaatttgat 499  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  19306715 catgtacattgtgttgtcaacaactttctctgcttcatctttcaccaatttgat 19306662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 265; Significance: 1e-147; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 91 - 459
Target Start/End: Complemental strand, 28245463 - 28245078
Alignment:
Q  91 aaaaccacttagtagtgttattttggctcctgttagtgtgctgtcttaggattgtgcagccacacctctgctaagttgttatagcagcagctttagttcc 190  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28245463 aaaaccacttagtaatgttattttggatcctgttagtgtgctgtcttaggattgtgcagccacacctctgctaagttgttatagcagcaactttagttcc 28245364  T
Q  191 ccatggtgggtattttttggggtttgtcccannnnnnncctgctgaattatagtagtagtgttatagcagcctctgccatacattgactttgtattttga 290  Q
    |||||||||||||||||||||||||||||||       ||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||    
T  28245363 ccatggtgggtattttttggggtttgtcccatttttttcctgctgaattatagcagtagttttatagcagcttctgccatacattgactttgtattttga 28245264  T
Q  291 atggaatatacaatattttgctagcctaattgtgttatagcagcctctgtcatttgttcgtttctat-----------------ttatgcattttttcgc 373  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||                 ||||||||||||||||    
T  28245263 atggaatatacaatattttgttagcctaattgtgttatagcagcctctgtcatttgtttgtttctatttatgcgtttttttcgcttatgcattttttcgc 28245164  T
Q  374 ttattgaattgtttcaattgcacatccatattgaattaaatatttacaattatattgagttgtttcataatacatgtacattgtgt 459  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  28245163 ttattgagttgtttcaattgcacatccatattgaattaaatattaacaattatattgagttgttttataatacatgtacattgtgt 28245078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 118 - 363
Target Start/End: Original strand, 11474694 - 11474939
Alignment:
Q  118 tcctgttagtgtgctgtcttaggattgtgcagccacacctctgctaagttgttatagcagcagctttagttccccatggtgggtattttttggggtttgt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  11474694 tcctgttagtgtgctgtcttaggattgtgcagccacacctctgctaagttgttatagcagcaactttagttccccatgttgggtattttttggggtttgt 11474793  T
Q  218 cccannnnnnncctgctgaattatagtagtagtgttatagcagcctctgccatacattgactttgtattttgaatggaatatacaatattttgctagcct 317  Q
    ||||       ||||||||||||||| || | | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11474794 cccatttttttcctgctgaattatagcagcacttttatagcagcttctgccatacattgactttgtattttgaatggaatatacaatattttgctagctt 11474893  T
Q  318 aattgtgttatagcagcctctgtcatttgttcgtttctatttatgc 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  11474894 aattgtgttatagcagcctctgtcatttgttcgtttctatttatgc 11474939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 118 - 363
Target Start/End: Original strand, 11502734 - 11502979
Alignment:
Q  118 tcctgttagtgtgctgtcttaggattgtgcagccacacctctgctaagttgttatagcagcagctttagttccccatggtgggtattttttggggtttgt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  11502734 tcctgttagtgtgctgtcttaggattgtgcagccacacctctgctaagttgttatagcagcaactttagttccccatgttgggtattttttggggtttgt 11502833  T
Q  218 cccannnnnnncctgctgaattatagtagtagtgttatagcagcctctgccatacattgactttgtattttgaatggaatatacaatattttgctagcct 317  Q
    ||||       ||||||||||||||| || | | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11502834 cccatttttttcctgctgaattatagcagcacttttatagcagcttctgccatacattgactttgtattttgaatggaatatacaatattttgctagctt 11502933  T
Q  318 aattgtgttatagcagcctctgtcatttgttcgtttctatttatgc 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  11502934 aattgtgttatagcagcctctgtcatttgttcgtttctatttatgc 11502979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 446 - 548
Target Start/End: Complemental strand, 28245059 - 28244941
Alignment:
Q  446 catgtacattgtgttgtcaacaactttctctgcttcatcttccaccaatttgat----------------gtctttgaaacattacacttcatcatattg 529  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||                ||||||||||||||||||||||||||||||    
T  28245059 catgtacattgtgttgtcaacaactttctctgtttcatctttcaccaatttgatattggtttccattgatgtctttgaaacattacacttcatcatattg 28244960  T
Q  530 aacatttttaccacctcat 548  Q
    |||||||||| ||||||||    
T  28244959 aacatttttagcacctcat 28244941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 317 - 359
Target Start/End: Original strand, 11474970 - 11475012
Alignment:
Q  317 taattgtgttatagcagcctctgtcatttgttcgtttctattt 359  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  11474970 taattgtgttatagcagcctctgtcatttgttcgtttctattt 11475012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 317 - 359
Target Start/End: Original strand, 11503010 - 11503052
Alignment:
Q  317 taattgtgttatagcagcctctgtcatttgttcgtttctattt 359  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  11503010 taattgtgttatagcagcctctgtcatttgttcgtttctattt 11503052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 91 - 456
Target Start/End: Complemental strand, 22490703 - 22490323
Alignment:
Q  91 aaaaccacttagtagtgttattttggctcctgttagtgtgctgtcttaggattgtgcagccacacctctgctaagttgttatagcagcagctttagttcc 190  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  22490703 aaaaccacttagtagtgttattttggctgctgttagtgtgatgtcttaggattgtgcagccacacctctactaagttgttatagcagcagctttggttcc 22490604  T
Q  191 ccatggtgggtattttttggggtttgtcccannnnnnncctgctgaattatagtagtagtgttatagcagcctctgccatacattgactttgtattttga 290  Q
    |||||||||||||||||||||||||||||||       ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  22490603 ccatggtgggtattttttggggtttgtcccatttttt-cctgctgaattatagcagtagtgttatagcagcttctgccatacattgactttgtattttga 22490505  T
Q  291 atggaatatacaatattttgctagcctaattgtgttatagcagcctctgtcatttgttcgtttctatttatgcattttttcgc----------------t 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||                |    
T  22490504 atggaatatacaatattttgctagcctaattgtgttatagcagcctctgtcatttgttcgtttgtatttatgagttttttcgcttatgcattttttcgct 22490405  T
Q  375 tattgaattgtttcaattgcacatccatattgaattaaatatttacaattatattgagttgtttcataatacatgtacattg 456  Q
    |||||| |||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  22490404 tattgagttgtttcaattgcacatcaatattgaattgaatattaacaattatattgagttgtttcataatacatgtacattg 22490323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 444 - 668
Target Start/End: Complemental strand, 22490304 - 22490059
Alignment:
Q  444 tacatgtacattgtgttgtcaacaactttctctgcttcatcttccaccaatttgat----------------------gtctttgaaacattacacttca 521  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||                      || |||| ||||||||||||||    
T  22490304 tacatgtacattgtgttgtcaacaactttctctgcttcatctttcaccaatttgatattggtttctgttgatgtctttgtatttgtaacattacacttca 22490205  T
Q  522 tcatattgaacatttttaccacctcatttacataatttctttcatgtggaatggtttccctttcggttttcacaagtttcctttcaagaaagtatgacaa 621  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  22490204 tcatattgaacatttttagcacctcacttacataatttctttcatgttgaatggtttccctttcggttttcacaagtttcctttcaagaaagtatgac-a 22490106  T
Q  622 attcttctatattagcatttcaaactcagacttcatcaatctcttaa 668  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  22490105 attcttctatattagcatttcaaactcagacttcatcaatctcttaa 22490059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 91 - 363
Target Start/End: Complemental strand, 38252299 - 38252027
Alignment:
Q  91 aaaaccacttagtagtgttattttggctcctgttagtgtgctgtcttaggattgtgcagccacacctctgctaagttgttatagcagcagctttagttcc 190  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38252299 aaaaccacttagtaatgttattttggatcctgttagtgtgctgtcttaggattgtgcagccacacctctgctaagttgttatagcagcaactttagttcc 38252200  T
Q  191 ccatggtgggtattttttggggtttgtcccannnnnnncctgctgaattatagtagtagtgttatagcagcctctgccatacattgactttgtattttga 290  Q
    |||||||||||||||||||||||||||||||       ||||||||||||||| || | | |||||||||| ||||||||||||||||||||||||||||    
T  38252199 ccatggtgggtattttttggggtttgtcccatttttttcctgctgaattatagcagcacttttatagcagcttctgccatacattgactttgtattttga 38252100  T
Q  291 atggaatatacaatattttgctagcctaattgtgttatagcagcctctgtcatttgttcgtttctatttatgc 363  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  38252099 atggaatatacaatattttgctagcttaattgtgttatagcagcctctgtcatttgttcgtttctatttatgc 38252027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 91 - 363
Target Start/End: Original strand, 43157243 - 43157515
Alignment:
Q  91 aaaaccacttagtagtgttattttggctcctgttagtgtgctgtcttaggattgtgcagccacacctctgctaagttgttatagcagcagctttagttcc 190  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  43157243 aaaaccacttagtaatgttattttggatcctgttagtgtgctgtcttaggattgtgcagccacacctctgctaagttgttatagcagcaactttagttcc 43157342  T
Q  191 ccatggtgggtattttttggggtttgtcccannnnnnncctgctgaattatagtagtagtgttatagcagcctctgccatacattgactttgtattttga 290  Q
    ||||| |||||||||||||||||||||||||       ||||||||||||||| || | | |||||||||| ||||||||||||||||||||||||||||    
T  43157343 ccatgttgggtattttttggggtttgtcccatttttttcctgctgaattatagcagcacttttatagcagcttctgccatacattgactttgtattttga 43157442  T
Q  291 atggaatatacaatattttgctagcctaattgtgttatagcagcctctgtcatttgttcgtttctatttatgc 363  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  43157443 atggaatatacaatattttgctagcttaattgtgttatagcagcctctgtcatttgttcgtttctatttatgc 43157515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 317 - 359
Target Start/End: Complemental strand, 38251996 - 38251954
Alignment:
Q  317 taattgtgttatagcagcctctgtcatttgttcgtttctattt 359  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  38251996 taattgtgttatagcagcctctgtcatttgttcgtttctattt 38251954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 317 - 359
Target Start/End: Original strand, 43157546 - 43157588
Alignment:
Q  317 taattgtgttatagcagcctctgtcatttgttcgtttctattt 359  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  43157546 taattgtgttatagcagcctctgtcatttgttcgtttctattt 43157588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 155; Significance: 7e-82; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 168 - 417
Target Start/End: Original strand, 48795375 - 48795628
Alignment:
Q  168 gttatagcagcagctttagttccccatggtgggtattttttggggtttgtcccannnnnnncctgctgaattatagtagtagtgtt---atagcagcctc 264  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||       ||| ||||||||||| |||||||||   |||||||||||    
T  48795375 gttatagcatcagatttagttccccatggtgggtattttttggggtttgtcccatttttttcctactgaattatagcagtagtgttgttatagcagcctc 48795474  T
Q  265 tgccatacattgactttgtattttgaatggaatatacaatattttgctagcctaattgtgttatagcagcctctgtcatttgttcgtttctatttatg-c 363  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||      
T  48795475 tgccatacattgactttgtattttgaatggaatatacaatattgtgctagcctaattgtgttataacaacctctgtcatttgttcgtttctatttatgtg 48795574  T
Q  364 attttttcgcttattgaattgtttcaattgcacatccatattgaattaaatatt 417  Q
     |||||| |||| |||| |||||||||||||||||| |||||||||| ||||||    
T  48795575 ttttttttgcttgttgagttgtttcaattgcacatcaatattgaattgaatatt 48795628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 495 - 656
Target Start/End: Original strand, 48795637 - 48795797
Alignment:
Q  495 ttgatgtctttgaaacattacacttcatcatattgaacatttttaccacctcatttacataatttctttcatgtggaatggtttccctttcggttttcac 594  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  48795637 ttgatgtctttgtaacattacacttcatcatattgaacatttttagcacctcatttacataatttctttcatgtggaatggtttccctttcggctttcac 48795736  T
Q  595 aagtttcctttcaagaaagtatgacaaattcttctatattagcatttcaaactcagacttca 656  Q
    |||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  48795737 aagtttccttccaagaaagtatgac-aattattctatattagcatttcaaactcagacttca 48795797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 446 - 668
Target Start/End: Complemental strand, 44574476 - 44574240
Alignment:
Q  446 catgtacattgtgttgtcaacaactttctctgcttcatcttccaccaatttgat----------------gtctttgaaacattacacttcatcatattg 529  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||                |||| || ||||||||||||||||||||||    
T  44574476 catgtacattgtgttgtcaacaactttctctgtttcatctttcaccaatttgatattggtttccattgatgtctctgtaacattacacttcatcatattg 44574377  T
Q  530 aacatttttaccacctcatttacataatttctttcatgtggaatggtttccctttcggttttcacaagtttcctttcaagaaagtatgacaaattcttct 629  Q
    |||||||||| ||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||    
T  44574376 aacatttttagcacctcata-acataatttctttcatgtgcaatggtttccctttcggttttcacaagtttccttccaagaaagtgtgac-aattcttct 44574279  T
Q  630 atattagcatttcaaactcagacttcatcaatctcttaa 668  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  44574278 atattagtatttcaaactcagacttcatcaatctcttaa 44574240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 91 - 175
Target Start/End: Original strand, 48794550 - 48794634
Alignment:
Q  91 aaaaccacttagtagtgttattttggctcctgttagtgtgctgtcttaggattgtgcagccacacctctgctaagttgttatagc 175  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  48794550 aaaaccacttagtagtgttattttggcttctgttaatgtgctgtcttaggattgtgcagccacgcctctgctaagttgttatagc 48794634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University