View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9572_low_22 (Length: 240)
Name: NF9572_low_22
Description: NF9572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9572_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 32 - 222
Target Start/End: Complemental strand, 53266129 - 53265940
Alignment:
| Q |
32 |
acaagggtgaaccaaaactcacttaaatgttannnnnnncactatttaatccaatttttgaagatctacattgaattaaaacttctaaaagcaaattata |
131 |
Q |
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| T |
53266129 |
acaagggtgaaccaaaactcacttaaatgttagggggg-cactatttaacccaatttttgaagatctacattgaattaaaacttctaaaagcaaattata |
53266031 |
T |
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| Q |
132 |
cttctcaaaaagccaaatttggtaattaaatatattgcagaccagttgaccttaacatagataagaagttcagtaattttcatcctaaaca |
222 |
Q |
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| T |
53266030 |
cttctcaaaaagccaaatttggtaattaaatatattgcagaccagttgaccttaacatagataagaagttcagtaattttcatcctaaaca |
53265940 |
T |
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