View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9572_low_3 (Length: 442)
Name: NF9572_low_3
Description: NF9572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9572_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 53125697 - 53126029
Alignment:
| Q |
1 |
agcaggacagctgagtaagcagattatagctaagacaagagagactgcatactttatatagaagacataggatttaccacatagtatattgcaaggttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53125697 |
agcaggacagctgagtaagcagattatagctaagacaagagagactgcatactttatatagaagacataggatttaccacatagtatattgcaaggttgt |
53125796 |
T |
|
| Q |
101 |
ccttagcatccatataactggatttcagtttgaagcgtatcatataaataacccagagggtcgtccccaatgttgcagtatcgagtaaggtgtgtatatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53125797 |
ccttagcatccatataactggatttcagtttgaagcgtatcatataaataacccagagggtcgtccccaatgttgcagtatcgagtaaggtgtgtatatc |
53125896 |
T |
|
| Q |
201 |
gtattccatgacaaaactgcagtatagtctaactgctagaaatatagctgtgagttcctgtgatttaagcgagagtcctgcgaagatttattaacacaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53125897 |
gtattccatgacaaaactgcagtatagtctaactgctagaaatatagctgtgagttcctgtgatttaagcgagagtcctgcgaagatttattaacacaca |
53125996 |
T |
|
| Q |
301 |
gagaaaaagcctgttatcattttagataaacat |
333 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
53125997 |
gagaaaaagcctgttattattttagataaacat |
53126029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 353 - 442
Target Start/End: Original strand, 53126015 - 53126104
Alignment:
| Q |
353 |
attttagataaacatatagaagattgattatcttcttcttctcgtttcttttctttatatgctggaaaacaaaggccagattattgctaa |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53126015 |
attttagataaacatatagaagattgattatcttcttcttctcatttcttttctttatatgctggaaaacaaaggccagattattgctaa |
53126104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 266
Target Start/End: Complemental strand, 28869794 - 28869712
Alignment:
| Q |
184 |
agtaaggtgtgtatatcgtattccatgacaaaactgcagtatagtctaactgctagaaatatagctgtgagttcctgtgattt |
266 |
Q |
| |
|
|||| |||||| || || ||||||||||||||||| ||||| || || || |||| |||||||||||| | |||||| ||||| |
|
|
| T |
28869794 |
agtatggtgtgaatgtcatattccatgacaaaactacagtacagcctcacagctaaaaatatagctgtcaattcctgggattt |
28869712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University