View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9572_low_4 (Length: 397)
Name: NF9572_low_4
Description: NF9572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9572_low_4 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 30761894 - 30761513
Alignment:
| Q |
1 |
ttcaatatggtgcaaggcttaattttgaaggggttcaagacaatgaaaatatagtaaaataggtgtaaatatgaaaagttgagaaggtgcaattgaaccc |
100 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30761894 |
ttcaatatggtgcaaggcttaattttgagggggttcaagacaatgaaaatatagtaaaataggtgtaaatatgaaaagttgagaaggtgcaattgaaccc |
30761795 |
T |
|
| Q |
101 |
c-tggccacaacgtggctccgacaatgtgtctaatataaa-tcccgacannnnnnn-gattaaaataggttatcaatcatggtctctcgttggatgaaat |
197 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30761794 |
cctggccacaacgtggctccgacaatgtgtctaatataaaatcccgacattttttttgattaaaataggttatcaatcatggtctctcgttggatgaaat |
30761695 |
T |
|
| Q |
198 |
gaaggaagcaatgagtgtttttaaggaggtgtttgagaagcctaatgaatacaaacacgacttgtatcctgaggacaatttgaagacatgtaagatgttt |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30761694 |
gaaggaagcaatgagtgtttttaaggaggtgtttgagaagcctaatgaatacaaacacgacttgtatcctgagaacaatttgaagacatgtaagatgttt |
30761595 |
T |
|
| Q |
298 |
tctagcactttcaaatatgaatttgataaggttcatctatggagggacactcttagacacccagcttatcctttggaacagt |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30761594 |
tctagcactttcaaatatgaatttgataaggttcatctttggagggacactcttagacacccagcttatcctttggaacagt |
30761513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 155 - 374
Target Start/End: Complemental strand, 30749528 - 30749309
Alignment:
| Q |
155 |
gattaaaataggttatcaatcatggtctctcgttggatgaaatgaaggaagcaatgagtgtttttaaggaggtgtttgagaagcctaatgaatacaaaca |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||| || |
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|
| T |
30749528 |
gattaaaataggttatcaatcatggtctctcgttggatgaaatgaaggaaacaatgagtattttcaaggaggtgtttgagaagcctaatgaatacaagca |
30749429 |
T |
|
| Q |
255 |
cgacttgtatcctgaggacaatttgaagacatgtaagatgttttctagcactttcaaatatgaatttgataaggttcatctatggagggacactcttaga |
354 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| ||||||||||||||||| || |||||||||| ||||||||||||||||||||||||| ||||| || |
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| T |
30749428 |
cgacttgtatcctgaggagattttgaagacatgcaagatgttttctagcaccttgaaatatgaatgtgataaggttcatctatggagggactctcttcga |
30749329 |
T |
|
| Q |
355 |
cacccagcttatcctttgga |
374 |
Q |
| |
|
|| ||||||||||||||||| |
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|
| T |
30749328 |
catccagcttatcctttgga |
30749309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 155 - 374
Target Start/End: Complemental strand, 30770979 - 30770760
Alignment:
| Q |
155 |
gattaaaataggttatcaatcatggtctctcgttggatgaaatgaaggaagcaatgagtgtttttaaggaggtgtttgagaagcctaatgaatacaaaca |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||| || |
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|
| T |
30770979 |
gattaaaataggttatcaatcatggtctctcgttggatgaaatgaaggaaacaatgagtattttcaaggaggtgtttgagaagcctaatgaatacaagca |
30770880 |
T |
|
| Q |
255 |
cgacttgtatcctgaggacaatttgaagacatgtaagatgttttctagcactttcaaatatgaatttgataaggttcatctatggagggacactcttaga |
354 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| ||||||||||||||||| || |||||||||| ||||||||||||||||||||||||| ||||| || |
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|
| T |
30770879 |
cgacttgtatcctgaggagattttgaagacatgcaagatgttttctagcaccttgaaatatgaatgtgataaggttcatctatggagggactctcttcga |
30770780 |
T |
|
| Q |
355 |
cacccagcttatcctttgga |
374 |
Q |
| |
|
|| ||||||||||||||||| |
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|
| T |
30770779 |
catccagcttatcctttgga |
30770760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 3 - 126
Target Start/End: Complemental strand, 21139143 - 21139019
Alignment:
| Q |
3 |
caatatggtgcaaggcttaattttgaaggggttcaagacaatgaaaatatagtaaaataggtgtaaatatgaaaagttgagaaggtgcaattgaa-cccc |
101 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| |||| ||||||| |||||||||||| |||| ||||||||||||||| ||||| |||| |
|
|
| T |
21139143 |
caatatggtgcaaggcttaattttgagggggttcaagacaataaaaacatagtaagataggtgtaaatttgaatagttgagaaggtgcagttgaaccccc |
21139044 |
T |
|
| Q |
102 |
tggccacaacgtggctccgacaatg |
126 |
Q |
| |
|
||||||| || |||||||| ||||| |
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|
| T |
21139043 |
tggccactacatggctccgccaatg |
21139019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 163 - 379
Target Start/End: Complemental strand, 30784264 - 30784048
Alignment:
| Q |
163 |
taggttatcaatcatggtctctcgttggatgaaatgaaggaagcaatgagtgtttttaaggaggtgtttgagaagcctaatgaatacaaacacgacttgt |
262 |
Q |
| |
|
||||||||||||||||| |||| || || ||||||| ||| ||||||||||||| |||||||||||||||| ||||||||| ||||| || || ||| |
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|
| T |
30784264 |
taggttatcaatcatggaatctcaatgaatcaaatgaaagaaacaatgagtgttttcaaggaggtgtttgagatgcctaatgagtacaagcaaaacatgt |
30784165 |
T |
|
| Q |
263 |
atcctgaggacaatttgaagacatgtaagatgttttctagcactttcaaatatgaatttgataaggttcatctatggagggacactcttagacacccagc |
362 |
Q |
| |
|
|| || | || ||||||||||||||| || |||| |||||| | | | ||||||| ||| ||||||||| |||||||||| | ||||||||||||| | |
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|
| T |
30784164 |
atgctaatgatgatttgaagacatgtaggaagtttactagcagtcttagatatgaaactgaaaaggttcatttatggagggatagtcttagacacccatc |
30784065 |
T |
|
| Q |
363 |
ttatcctttggaacagt |
379 |
Q |
| |
|
| |||||||||| |||| |
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|
| T |
30784064 |
tcatcctttggaccagt |
30784048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 191 - 379
Target Start/End: Complemental strand, 30741846 - 30741658
Alignment:
| Q |
191 |
atgaaatgaaggaagcaatgagtgtttttaaggaggtgtttgagaagcctaatgaatacaaacacgacttgtatcctgaggacaatttgaagacatgtaa |
290 |
Q |
| |
|
|||||||||||||| |||||||| |||| |||||||||||||||| || | |||||||||| | |||| |||| ||| || |||||||||||||||| |
|
|
| T |
30741846 |
atgaaatgaaggaaacaatgagtattttcaaggaggtgtttgagatgcgttatgaatacaagaaaaacttatatcttgatgatgatttgaagacatgtaa |
30741747 |
T |
|
| Q |
291 |
gatgttttctagcactttcaaatatgaatttgataaggttcatctatggagggacactcttagacacccagcttatcctttggaacagt |
379 |
Q |
| |
|
||| ||| |||| | | | | ||||||| ||| ||||||||| |||||||||| | ||||||||||||| || ||||||||||||||| |
|
|
| T |
30741746 |
gatatttactagtagtctaagatatgaaagtgaaaaggttcatttatggagggatagtcttagacacccatctcatcctttggaacagt |
30741658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 374
Target Start/End: Complemental strand, 30801729 - 30801510
Alignment:
| Q |
155 |
gattaaaataggttatcaatcatggtctctcgttggatgaaatgaaggaagcaatgagtgtttttaaggaggtgtttgagaagcctaatgaatacaaaca |
254 |
Q |
| |
|
|||| ||| ||||||| |||||||| | || ||||| ||||||||||| |||||||| ||||||||||| | ||| | | |||| |||| ||||| | |
|
|
| T |
30801729 |
gattgaaacaggttattaatcatgggatttcaatggatcaaatgaaggaaacaatgagtatttttaaggagatttttcatatgcctgatgagtacaagaa |
30801630 |
T |
|
| Q |
255 |
cgacttgtatcctgaggacaatttgaagacatgtaagatgttttctagcactttcaaatatgaatttgataaggttcatctatggagggacactcttaga |
354 |
Q |
| |
|
|||||| | || | ||| || ||| |||| ||||||||| |||||| |||||| |||| | ||| ||||||||||||||| | |||| |||| | |
|
|
| T |
30801629 |
aaacttgtgtactaatgacccttccaagccatgcaagatgtttactagcagtttcaactatgcaactgaaaaggttcatctatggcgagacagtcttcgc |
30801530 |
T |
|
| Q |
355 |
cacccagcttatcctttgga |
374 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
30801529 |
cacccatgttatcctttgga |
30801510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 28444633 - 28444511
Alignment:
| Q |
5 |
atatggtgcaaggcttaattttgaaggggttcaagacaatgaaaatatagtaaaataggtgtaaatatgaaaagttgagaaggtgcaattgaacccctgg |
104 |
Q |
| |
|
||||||||||||| || ||||||| ||||||||| ||| | |||||||||||||||||||||||| |||||||||||||||||| | ||||||||||| |
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|
| T |
28444633 |
atatggtgcaaggttttattttgagggggttcaaaacactaaaaatatagtaaaataggtgtaaaattgaaaagttgagaaggtggagttgaacccctga |
28444534 |
T |
|
| Q |
105 |
ccacaacgtggctccgacaatgt |
127 |
Q |
| |
|
|||| | ||||||||| |||||| |
|
|
| T |
28444533 |
ccactatgtggctccgccaatgt |
28444511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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