View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9572_low_5 (Length: 384)
Name: NF9572_low_5
Description: NF9572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9572_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 8933813 - 8934178
Alignment:
| Q |
1 |
ttatacacaataatttcacaagtgtgaggttgaaacttgaaatctaattctagaggaatatttgnnnnnnnncagtataaaaaatggcaacagtgactgc |
100 |
Q |
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| T |
8933813 |
ttatacataataatttcacaagtgtgaggttgaaacttgaaatctaattctagaggaatatttgttttttt-cagtataaaaaatggcaacagtgactgc |
8933911 |
T |
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| Q |
101 |
ttcaagcaacatagtatcaagaaattctcatatctaccatgtcaatgtaccaactatctcatgtgagtctaaaacagcacgaatgaaacttggttctatg |
200 |
Q |
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| T |
8933912 |
ttcaagcaacatagtatcaagaaattctcatatctaccatgtcaatgtaccaactatctcatgtgagtctaaaacagcacgaatgaaacttggttctatg |
8934011 |
T |
|
| Q |
201 |
agaaaagccaatacacataatggactcagaattttgaactcattggatgagttactaaatagaactccaattaaaatgaaggcagtgaaatcaaggagaa |
300 |
Q |
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| T |
8934012 |
agaaaagccaatacacataatggactcagaattttgaactcattggatgagttactaaatagaactccaattaaaatgaaggcagtgaaatcaaggagaa |
8934111 |
T |
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| Q |
301 |
aaggtcttcagaaaaagaatgttatgccgaaaggtatcatagtttgtggcatgaatttgatctttgt |
367 |
Q |
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| T |
8934112 |
aaggtcttcagaaaaagaatgttatgccgaaaggtatcatagtttgtggcatgaatttgatctttgt |
8934178 |
T |
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