View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9572_low_6 (Length: 380)
Name: NF9572_low_6
Description: NF9572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9572_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 11 - 362
Target Start/End: Original strand, 1668867 - 1669206
Alignment:
| Q |
11 |
cagagaagtgagcccacattattatcggggcgggttagcccacaaacataaccgggagcttacaattctatttc-ttttgccaaacaaacaaacaaacta |
109 |
Q |
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| T |
1668867 |
cagagaagtgagcccacattattatcggggcgggtcagcccacaaacataaccgggagcttacaattctatttcattttgccaaacaaacaaacaaacta |
1668966 |
T |
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| Q |
110 |
tcttatttcttttataccaaacagttttagggtttaggttaaactttttgtttcgtttcaactctgaaattgaaccagaaagaaaatggagattgagatg |
209 |
Q |
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| T |
1668967 |
tcttatttcttttataccaaacagttttagggtttaggttaa-------------------ctctgaaattgaaccagaaagaaaatggagattgagatg |
1669047 |
T |
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| Q |
210 |
gaagccaagaattcttcattcgaggttgacctcggtaacctaatggccttcgactctcatcattcctactacccttctcaacaatccaggtaccactttc |
309 |
Q |
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| T |
1669048 |
gaagccaagaattcttcattcgaggttgacctcggtaacctaatggccttagactctcatcattcctactacccttctcaacaatccaggtaccactttc |
1669147 |
T |
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| Q |
310 |
tag------cgccgccacttcaattttcatttttcatatttcaatctttgatacatgtt |
362 |
Q |
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| T |
1669148 |
tagcgccgccgccgccacttcaattttcatttttcatatttcaatctttgatacatgtt |
1669206 |
T |
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